Pairwise Alignments

Query, 904 a.a., Probable DNA polymerase I PolA from Mycobacterium tuberculosis H37Rv

Subject, 925 a.a., DNA polymerase I from Pseudomonas simiae WCS417

 Score =  501 bits (1291), Expect = e-146
 Identities = 343/937 (36%), Positives = 502/937 (53%), Gaps = 69/937 (7%)

Query: 17  LMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLLRDEAPTHIAAAFDVSR 76
           L+L+DG+S  +RAF+ALP     T  GL T AV G   ML +L +    +  A  FD   
Sbjct: 6   LVLVDGSSYLYRAFHALPP--LTTSKGLPTGAVKGVLNMLKSLRKQYPNSPFAVVFDAKG 63

Query: 77  QTFRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLATQAE 136
            TFR + Y EYKANR S PD+   QI+   + + ALG  +L   G EADD+I TLA  + 
Sbjct: 64  GTFRDEMYAEYKANRPSMPDDMRLQIEPLHQSVIALGFPLLCVEGVEADDVIGTLARSSA 123

Query: 137 NEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPRQYPDFAAL 196
                V++ TGD+D  QLV   +T++    G    +    E V EK+G+ P Q  D+ AL
Sbjct: 124 AADRPVVISTGDKDMAQLVDGHITLVNTMTG----SAMDIEGVKEKFGVAPEQIIDYLAL 179

Query: 197 RGDPSDNLPGIPGVGEKTAAKWIAEY-GSLRSLVDNVDAVRGKVGDALRANLASVVRNRE 255
            GD SDN+PG+PG+G KTA+  +    G ++ L + +D V        +   A +  +RE
Sbjct: 180 MGDSSDNIPGVPGIGPKTASGLLVGVNGGIKELYEQLDIVPSLPIRGAKTLPAKLEEHRE 239

Query: 256 -------LTDLVRDVPLAQTPDTLRLQPWDRDHIHRLFDDLEFR-----VLRDRLFDTLA 303
                  L  +  DVPL    D L L   DR+ +  L+  LEF+     + RD     L 
Sbjct: 240 MAFLSYQLATIKCDVPLDVGLDDLHLIEPDREKLLELYTLLEFKSWFDEIQRDAKRVELK 299

Query: 304 AAGGPE----------------VDEG-FDVRGGALAPGTVRQWLAEHAG-DGRRAGLTVV 345
           AA   E                +D+  FD+    L   T+  +  E  G D ++A L  V
Sbjct: 300 AAPAVEAVVETVAPTEASYTTILDQATFDIWLKKLNEATLFAFDTETTGIDAQQAQLVGV 359

Query: 346 GTHLPHGGDATAMAVAAADGEGAYLDTATLTPDDDAALAAWLADPAKPKALHEAKAAVHD 405
              +     A      +  G    LD  T+      AL   L DP K K    AK  ++ 
Sbjct: 360 SFAVQPHEAAYIPLTHSYIGAPQQLDRDTVL----LALKPLLEDPTKLKVGQHAKFDMNI 415

Query: 406 LAG--------RGWTLEGVTSDTALAAYLVRPGQRSFTLDDLSLRYLR------RELRAE 451
           LA          G T+ G+  DT L +Y++        +D L+ +YL       +++  +
Sbjct: 416 LANCAIGGDPAHGITVRGIAFDTMLESYVLNSTATRHDMDSLAKKYLDYDTVAFQDIAGK 475

Query: 452 TPQQ---QQLSLLDDDDTDAETIQTTILRARAVIDLADALDAELARIDSTA-LLGEMELP 507
             +Q    Q++L       AE    T+        L   L A+L+ I S A +L ++E+P
Sbjct: 476 GAKQLTFDQIALEQAGPYAAEDADITLR-------LHQELFAQLSAIPSLASVLTDIEIP 528

Query: 508 VQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGVIGKQINLGSPKQLQVVLFD 567
           +  VLA++E  G  VD  +L     + G+++ +    A+ + G++ NLGSPKQL  +L++
Sbjct: 529 LVPVLARIERQGALVDKDLLGIQSIELGNKMVELERQAFEIAGEEFNLGSPKQLGAILYE 588

Query: 568 ELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVTVDGLL--QAVAA 625
           +LG+P  K+T  G  + A+ + +   +  +P  + L+ +R +++LK T    L  Q    
Sbjct: 589 KLGLPVLKKTGKGQASTAEEVLAKLAEDDYPLPKVLMQYRSMSKLKSTYTDRLPEQINPR 648

Query: 626 DGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIE 685
            GRIHT+++Q +AATGRLSS++PNLQNIP+RT  GRRIR AFV   GY +L+ ADYSQIE
Sbjct: 649 TGRIHTSYHQAVAATGRLSSSDPNLQNIPVRTAEGRRIRQAFVAPKGY-KLLAADYSQIE 707

Query: 686 MRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSA 745
           +RIMAHLS DEGL+ AF    D+H+  A+  F V + +VT + RR  KA+++GL YG+ A
Sbjct: 708 LRIMAHLSKDEGLMNAFRDNLDVHTATAAEVFKVELGDVTSDQRRSAKAINFGLIYGMGA 767

Query: 746 YGLSQQLKISTEEANEQMDAYFARFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDS 805
             L + + + T+ A   +D YFAR+ GVR+Y+     +A   GY  T  GRR YLP+++S
Sbjct: 768 QKLGKDIGVDTKTAKAYIDVYFARYPGVREYMERTRAQAADQGYVETFFGRRLYLPDINS 827

Query: 806 SNRQVREAAERAALNAPIQGSAADIIKVAMIQVDKALNEAQLASRMLLQVHDELLFEIAP 865
           +  Q R AAER A+NAP+QG+AADIIK AM++VD  L E+ L ++++LQVHDEL+ E+  
Sbjct: 828 NKPQERAAAERTAINAPMQGTAADIIKKAMVRVDNWLTESGLDAKVILQVHDELVVEVRE 887

Query: 866 GERERVEALVRDKMGGAYPLDVPLEVSVGYGRSWDAA 902
               +V   +R+ M  A  LDVPL V VG G +WD A
Sbjct: 888 DLVAQVSEKIREHMSAAAQLDVPLLVEVGVGNNWDEA 924