Pairwise Alignments

Query, 612 a.a., Probable oligopeptide-transport ATP-binding protein ABC transporter OppD from Mycobacterium tuberculosis H37Rv

Subject, 555 a.a., ABC transporter, nucleotide binding/ATPase protein (peptide) from Agrobacterium fabrum C58

 Score =  429 bits (1102), Expect = e-124
 Identities = 249/601 (41%), Positives = 351/601 (58%), Gaps = 52/601 (8%)

Query: 3   PLLEVTDLAVTFRTDGDPVTAVRGISYRVEPGEVVAMVGESGSGKSAAAMAVVGLLPEYA 62
           PLL V DL+V + +      AV  +S+ +  GE VA+VGESG GKS  A+A+  LLP+ A
Sbjct: 4   PLLGVRDLSVRYHSRSGEAVAVENLSFDIAAGEAVALVGESGCGKSTTALALSNLLPDEA 63

Query: 63  QVRGSVRLQGTELLGLADNAMSRFRGKAIGTVFQDPMSALTPVYTVGDQIAEAIEVHQPR 122
              G V   G +L  L   A     G  IG +FQ+PMSAL PVYTVGDQIAE +  H+ R
Sbjct: 64  SSSGEVTFDGLDLFRLPPKAWRPILGPRIGMIFQEPMSALNPVYTVGDQIAEVLHAHE-R 122

Query: 123 VGKKAARRRAVELLDLVGISQPQRRSRAFPHELSGGERQRVVIAIAIANDPDLLICDEPT 182
           + +KAAR R +ELLDLV + +P RR  ++PHELSGG+RQR +IA AIA  P LLI DEPT
Sbjct: 123 LSRKAARSRVLELLDLVSMPEPHRRIASYPHELSGGQRQRAMIAQAIALTPLLLIADEPT 182

Query: 183 TALDVTVQAQILDVLKAARDVTGAGVLIITHDLGVVAEFADRALVMYAGRVVESAGVNDL 242
           TALD T+Q+QIL+++   R     G+L+I+HDL +V+ + DR +VM+ G+ +E      L
Sbjct: 183 TALDSTIQSQILELIDRLRRDLSMGLLLISHDLTLVSRWTDRVVVMHNGKRMEELKAEHL 242

Query: 243 YRDRRMPYTVGLLGSVPRLDAAQGTRLVPIPGAPPSLAGLAPGCPFAPRCPLVIDECLTA 302
           +++ + PYT GL+G+  RL   +                                    A
Sbjct: 243 FQESQHPYTKGLIGASIRLGDGR-----------------------------------HA 267

Query: 303 EPELLDVATDHRAACIRTELVTGRSAADIYRVKTEARPAALGDASVVVRVRHLVKTYRLA 362
             E L+    HR +        G ++ +I      A P     A  ++ V  L   Y  A
Sbjct: 268 SSERLNEIRTHRNS-------NGTTSFEIRSPPVAAEPRTNATADALLEVEDLTVRYDPA 320

Query: 363 KGVVLRRAIGEVRAVDGISLELRQGRTLGIVGESGSGKSTTLHEILELAAPQSGSIEVLG 422
                        AVD ++ EL +G TLG+VGESGSGKS+    +  L     G I   G
Sbjct: 321 SKT--------PPAVDRVTFELLRGETLGLVGESGSGKSSLSKALSRLIPVAGGQILFEG 372

Query: 423 TDVATLGTAERRSLRRDIQVVFQDPVASLDPRLPVFDLIAEPLQANGFGKN-ETHARVAE 481
            D+   G A+ R+ R  +Q++FQDP +SL+PR  V D++   L A+ +  + +  +R++E
Sbjct: 373 QDITHAGGADLRAFRGRVQMIFQDPYSSLNPRRTVGDILDSVLHAHKYRNSADRQSRISE 432

Query: 482 LLDIVGLRHGDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIINL 541
            LD V L      R+P EFSGGQ+QRI IARAL ++P ++  DEPVSALDVS+QA I+NL
Sbjct: 433 ALDQVRLPRSAVERFPHEFSGGQRQRIAIARALIVRPSLVICDEPVSALDVSVQAQILNL 492

Query: 542 LLDLQEQFGLSYLFVSHDLSVVKHLAHQVAVMLAGTVVEQGDSEEVFGNPKHEYTRRLLG 601
           L DL+E+ GLSYLF+SHDL+VVK+++ ++ VM  G ++E+G+ + ++ NP HEYTR+L+ 
Sbjct: 493 LADLKEEAGLSYLFISHDLAVVKYISDRIMVMKDGHIIERGNHQNLWSNPSHEYTRKLIA 552

Query: 602 A 602
           A
Sbjct: 553 A 553