Pairwise Alignments

Query, 612 a.a., Probable oligopeptide-transport ATP-binding protein ABC transporter OppD from Mycobacterium tuberculosis H37Rv

Subject, 603 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  462 bits (1188), Expect = e-134
 Identities = 266/613 (43%), Positives = 376/613 (61%), Gaps = 55/613 (8%)

Query: 3   PLLEVTDLAVTFRTDGDPVTAVRGISYRVEPGEVVAMVGESGSGKSAAAMAVVGLL-PEY 61
           P+L V +L  +F  DG+  + VR +S+ V+ GE VA+VGESGSGKS  +++++ LL P  
Sbjct: 5   PVLSVRNLTTSFLVDGEWKSVVRDVSFDVKSGETVAIVGESGSGKSVTSLSLMRLLAPAS 64

Query: 62  AQVRGSVRLQGTELLGLADNAMSRFRGKAIGTVFQDPMSALTPVYTVGDQIAEAIEVHQP 121
           + + G V L G  LL L++  M   RG  I  +FQ+PM++L P++T+G QI+E +  H+ 
Sbjct: 65  SHIEGEVLLNGRNLLTLSEREMRGVRGNDISMIFQEPMTSLNPIFTIGRQISEVLIRHKG 124

Query: 122 RVGKKAARRRAVELLDLVGISQPQRRSRAFPHELSGGERQRVVIAIAIANDPDLLICDEP 181
            + K+ AR   V LL+ V I     R   +PH+ SGG RQRV+IA+A+A+ P LLI DEP
Sbjct: 125 -LSKQEARAETVRLLEKVRIPNAASRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEP 183

Query: 182 TTALDVTVQAQILDVLKAARDVTGAGVLIITHDLGVVAEFADRALVMYAGRVVESAGVND 241
           TTALDVT+Q QILD++K  ++  G  VL ITHD+GVVAE ADR +VMY G  VE+    D
Sbjct: 184 TTALDVTIQGQILDLIKLLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGDAVETGATED 243

Query: 242 LYRDRRMPYTVGLLGSVPRLDAAQGTRLVPIPGAPPSLAGLAPGCPFAPRCPLV-IDECL 300
           ++R  + PYT  LL +VP+L +    +                   +  R P++ +   L
Sbjct: 244 IFRRGQHPYTRALLSAVPKLGSMHDRQ-------------------WPTRFPVLDLKTGL 284

Query: 301 TAEPELLDVATDHRAACIRTELVTGRSAADIYRVKTEARPAALGDASVVVRVRHLVKTYR 360
           + EP+  +VA     AC +T                            V+ V++LV  + 
Sbjct: 285 STEPQ--EVA--ETVACGQTP---------------------------VLSVKNLVTRFP 313

Query: 361 LAKGVVLRRAIGEVRAVDGISLELRQGRTLGIVGESGSGKSTTLHEILELAAPQSGSIEV 420
           +  G+  R+  G V AV+ +S +L QG TL +VGESG GKSTT   I+ L  P SG + +
Sbjct: 314 IRSGLWARQT-GAVHAVENVSFDLFQGETLSLVGESGCGKSTTGRSIMRLVEPSSGDVSL 372

Query: 421 LGTDVATLGTAERRSLRRDIQVVFQDPVASLDPRLPVFDLIAEPLQANGFGKN-ETHARV 479
            G DV  L T   R++R+ +Q++FQDP +SL+PR+ V   I+EP   +  G   +   + 
Sbjct: 373 DGYDVMRLDTVGLRNMRKSVQMIFQDPFSSLNPRMTVGTAISEPFIKHRLGSTKQAKEKT 432

Query: 480 AELLDIVGLRHGDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGII 539
           A+LL+ VGL    A+RYP EFSGGQ+QRI IARALAL PK++  DE VSALDVSI+A + 
Sbjct: 433 ADLLEKVGLSADMANRYPHEFSGGQRQRIAIARALALDPKVIVADESVSALDVSIKAQVC 492

Query: 540 NLLLDLQEQFGLSYLFVSHDLSVVKHLAHQVAVMLAGTVVEQGDSEEVFGNPKHEYTRRL 599
           NLLLDLQ+   L++LF+SHD++VV+ ++H+VAVM  G +VE G    VF NP+H YT++L
Sbjct: 493 NLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAAVFDNPQHPYTKKL 552

Query: 600 LGAVPQPDPARRG 612
           + AVP PDPARRG
Sbjct: 553 MAAVPVPDPARRG 565



 Score =  150 bits (379), Expect = 2e-40
 Identities = 96/273 (35%), Positives = 152/273 (55%), Gaps = 18/273 (6%)

Query: 2   SPLLEVTDLAVTF--------RTDGDPVTAVRGISYRVEPGEVVAMVGESGSGKSAAAMA 53
           +P+L V +L   F        R  G  V AV  +S+ +  GE +++VGESG GKS    +
Sbjct: 300 TPVLSVKNLVTRFPIRSGLWARQTG-AVHAVENVSFDLFQGETLSLVGESGCGKSTTGRS 358

Query: 54  VVGLLPEYAQVRGSVRLQGTELLGLADNAMSRFRGKAIGTVFQDPMSALTPVYTVGDQIA 113
           ++ L+   +   G V L G +++ L    +   R K++  +FQDP S+L P  TVG  I+
Sbjct: 359 IMRLVEPSS---GDVSLDGYDVMRLDTVGLRNMR-KSVQMIFQDPFSSLNPRMTVGTAIS 414

Query: 114 EAIEVHQPRVGK-KAARRRAVELLDLVGISQPQRRSRAFPHELSGGERQRVVIAIAIAND 172
           E    H  R+G  K A+ +  +LL+ VG+S     +  +PHE SGG+RQR+ IA A+A D
Sbjct: 415 EPFIKH--RLGSTKQAKEKTADLLEKVGLSADM--ANRYPHEFSGGQRQRIAIARALALD 470

Query: 173 PDLLICDEPTTALDVTVQAQILDVLKAARDVTGAGVLIITHDLGVVAEFADRALVMYAGR 232
           P +++ DE  +ALDV+++AQ+ ++L   +       L I+HD+ VV   + R  VMY G 
Sbjct: 471 PKVIVADESVSALDVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGE 530

Query: 233 VVESAGVNDLYRDRRMPYTVGLLGSVPRLDAAQ 265
           +VE      ++ + + PYT  L+ +VP  D A+
Sbjct: 531 IVEIGPRAAVFDNPQHPYTKKLMAAVPVPDPAR 563