Pairwise Alignments

Query, 612 a.a., Probable oligopeptide-transport ATP-binding protein ABC transporter OppD from Mycobacterium tuberculosis H37Rv

Subject, 606 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  431 bits (1108), Expect = e-125
 Identities = 259/609 (42%), Positives = 358/609 (58%), Gaps = 57/609 (9%)

Query: 4   LLEVTDLAVTFRTDGDPVTAVRGISYRVEPGEVVAMVGESGSGKSAAAMAVVGLLPEYAQ 63
           LL V  L+V F   GD    V  IS+RVEPG  VA+VGESGSGKS  +++ + L      
Sbjct: 9   LLSVEGLSVEF---GDS-RVVDDISFRVEPGRTVAVVGESGSGKSVTSLSTMRLADMMGA 64

Query: 64  V--RGSVRLQGTELLGLADNAMSRFRGKAIGTVFQDPMSALTPVYTVGDQIAEAIEVHQP 121
               G +  +G +LL  +   M   RGK I  +FQ+PM++L PV+T+GDQI E + +H+ 
Sbjct: 65  TYPTGKILFEGKDLLKASQKEMRSIRGKEIAMIFQEPMTSLNPVFTIGDQICEVLVLHE- 123

Query: 122 RVGKKAARRRAVELLDLVGISQPQRRSRAFPHELSGGERQRVVIAIAIANDPDLLICDEP 181
           ++GK AA  +A +LLD+V +         +PH+LSGG RQRV+IA+A+A  P LLI DEP
Sbjct: 124 KLGKTAAMEQAKQLLDMVRLPDAAELLHRYPHQLSGGMRQRVMIAMALACRPKLLIADEP 183

Query: 182 TTALDVTVQAQILDVLKAARDVTGAGVLIITHDLGVVAEFADRALVMYAGRVVESAGVND 241
           TTALDVT+QAQIL++++  +   G G++ ITHD+GVVAE AD  +VM+ G+ VE   V D
Sbjct: 184 TTALDVTIQAQILNIMRDLQKKLGMGMVFITHDMGVVAEMADDVVVMWKGKKVEEGPVKD 243

Query: 242 LYRDRRMPYTVGLLGSVPRLDAAQGTRLVPIPGAPPSLAGLAPGCPFAPRCPLVIDECLT 301
           ++ + + PYT  LL +VPRL + +G                     F  R PL       
Sbjct: 244 IFANPQHPYTRALLSAVPRLGSMEGEA-------------------FPKRLPLT------ 278

Query: 302 AEPELLDVATDHRAACIRTELVTGRSAADIYRVKTEARPAALGDASVVVRVRHLVKTYRL 361
                  V  D +   I  E V               +  A  D   ++ V+ L   + +
Sbjct: 279 -------VLQDGQPVVIGEERV---------------QDTAKYDQKPLLSVKDLFVRFDI 316

Query: 362 AKGVVLRRAIGEVRAVDGISLELRQGRTLGIVGESGSGKSTTLHEILELAAPQSGSIEVL 421
            K +   +A   + AV  +S ++  G TL +VGESGSGKST    I +L    SG I   
Sbjct: 317 RKNL-FGKATHRLSAVQKVSFDIHAGETLALVGESGSGKSTIGRTIQQLQTAVSGEIAFN 375

Query: 422 GTDVATLGTAERRSLRRDIQVVFQDPVASLDPRLPVFDLIAEPLQANGFGKNE--THARV 479
           G   + +  AER  +R+++Q +FQDP ASLDPR  V   IAEP+  +G   ++     RV
Sbjct: 376 GRSYSQMSAAERFRMRQEVQYIFQDPFASLDPRKTVGFSIAEPINTHGLINDQKAVRRRV 435

Query: 480 AELLDIVGLRHGDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGII 539
            ELL+ VGL    A+RYP EFSGGQ+QR+ IARALA  PK++  DE +SALDVSIQA II
Sbjct: 436 DELLERVGLSSEHAARYPHEFSGGQRQRVCIARALASDPKLIIADEALSALDVSIQAQII 495

Query: 540 NLLLDLQEQFGLSYLFVSHDLSVVKHLAHQVAVMLAGTVVEQGDSEEVFGNPKHEYTRRL 599
           NL +DLQ + GL+YLF+SHD++VV+ ++H+VAV+  G ++E G  ++VF  P H+YTRRL
Sbjct: 496 NLFMDLQAERGLAYLFISHDMAVVEKMSHRVAVLYLGQIMELGSRQQVFETPTHDYTRRL 555

Query: 600 LGAVPQPDP 608
           L AVP  DP
Sbjct: 556 LSAVPVADP 564



 Score =  166 bits (419), Expect = 3e-45
 Identities = 107/284 (37%), Positives = 154/284 (54%), Gaps = 15/284 (5%)

Query: 3   PLLEVTDLAVTFRTDGD-------PVTAVRGISYRVEPGEVVAMVGESGSGKSAAAMAVV 55
           PLL V DL V F    +        ++AV+ +S+ +  GE +A+VGESGSGKS     + 
Sbjct: 303 PLLSVKDLFVRFDIRKNLFGKATHRLSAVQKVSFDIHAGETLALVGESGSGKSTIGRTIQ 362

Query: 56  GLLPEYAQVRGSVRLQGTELLGLADNAMSRFRGKA-IGTVFQDPMSALTPVYTVGDQIAE 114
            L      V G +   G     ++  A  RFR +  +  +FQDP ++L P  TVG  IAE
Sbjct: 363 QL---QTAVSGEIAFNGRSYSQMS--AAERFRMRQEVQYIFQDPFASLDPRKTVGFSIAE 417

Query: 115 AIEVHQPRVGKKAARRRAVELLDLVGISQPQRRSRAFPHELSGGERQRVVIAIAIANDPD 174
            I  H     +KA RRR  ELL+ VG+S     +  +PHE SGG+RQRV IA A+A+DP 
Sbjct: 418 PINTHGLINDQKAVRRRVDELLERVGLSS--EHAARYPHEFSGGQRQRVCIARALASDPK 475

Query: 175 LLICDEPTTALDVTVQAQILDVLKAARDVTGAGVLIITHDLGVVAEFADRALVMYAGRVV 234
           L+I DE  +ALDV++QAQI+++    +   G   L I+HD+ VV + + R  V+Y G+++
Sbjct: 476 LIIADEALSALDVSIQAQIINLFMDLQAERGLAYLFISHDMAVVEKMSHRVAVLYLGQIM 535

Query: 235 ESAGVNDLYRDRRMPYTVGLLGSVPRLDAAQGTRLVPIPGAPPS 278
           E      ++      YT  LL +VP  D     R+  I G  P+
Sbjct: 536 ELGSRQQVFETPTHDYTRRLLSAVPVADPTIERRIAMIEGEIPN 579