Pairwise Alignments

Query, 612 a.a., Probable oligopeptide-transport ATP-binding protein ABC transporter OppD from Mycobacterium tuberculosis H37Rv

Subject, 616 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  464 bits (1195), Expect = e-135
 Identities = 262/613 (42%), Positives = 376/613 (61%), Gaps = 53/613 (8%)

Query: 1   MSPLLEVTDLAVTFRTDGDPVTAVRGISYRVEPGEVVAMVGESGSGKSAAAMAVVGLLP- 59
           +SP+L V +L  +FR DG   + VR +S+ + P E VA+VGESGSGKS  +++++ LL  
Sbjct: 15  VSPVLSVQNLTTSFRVDGGWKSVVRNMSFDIAPRETVAIVGESGSGKSVTSLSIMRLLDR 74

Query: 60  EYAQVRGSVRLQGTELLGLADNAMSRFRGKAIGTVFQDPMSALTPVYTVGDQIAEAIEVH 119
           + +++ G V L G +LL L +  M + RGK I  +FQ+PM++L P++ +G QIAEA+ VH
Sbjct: 75  KTSRIEGKVMLGGRDLLALPEEEMRKVRGKDISMIFQEPMTSLNPIFPIGKQIAEALTVH 134

Query: 120 QPRVGKKAARRRAVELLDLVGISQPQRRSRAFPHELSGGERQRVVIAIAIANDPDLLICD 179
           Q  +   AA+   + LL+ V I     R   +PH+ SGG RQRV+IA+A+A+ P LLI D
Sbjct: 135 QD-ISSSAAKAEVIRLLEKVRIPNAASRFGDYPHQFSGGMRQRVMIAMALASKPKLLIAD 193

Query: 180 EPTTALDVTVQAQILDVLKAARDVTGAGVLIITHDLGVVAEFADRALVMYAGRVVESAGV 239
           EPTTALDVT+Q QILD++K  ++  G  VL ITHD+GVVAE ADR +VM+ G VVE+   
Sbjct: 194 EPTTALDVTIQGQILDLIKQLQEEEGMSVLFITHDMGVVAEVADRTIVMFRGDVVETGTT 253

Query: 240 NDLYRDRRMPYTVGLLGSVPRLDAAQGTRLVPIPGAPPSLAGLAPGCPFAPRCPLVIDEC 299
           +D++   + PYT  LL +VP+L + + +RL+P                   R P++    
Sbjct: 254 DDIFHRGQHPYTRALLSAVPKLGSMR-SRLLPA------------------RFPII---- 290

Query: 300 LTAEPELLDVATDHRAACIRTELVTGRSAADIYRVKTEARPAALGDASVVVRVRHLVKTY 359
                                ++ TG S   +     E +    G  + ++ V+ L   +
Sbjct: 291 ---------------------DIKTGESPPVV-----ETKDTVSGGKTPILSVKDLTTRF 324

Query: 360 RLAKGVVLRRAIGEVRAVDGISLELRQGRTLGIVGESGSGKSTTLHEILELAAPQSGSIE 419
            +  G+  R++ G V AV+ +S +L +G TL +VGESG GKSTT   I  L  P SG++ 
Sbjct: 325 DIRSGLFGRKS-GAVHAVEKVSFDLAEGETLSLVGESGCGKSTTGRSITRLIEPTSGNVT 383

Query: 420 VLGTDVATLGTAERRSLRRDIQVVFQDPVASLDPRLPVFDLIAEPLQANGFG-KNETHAR 478
           + G +V  L     R++RR +Q+VFQDP ASLDPR+ V   I EP   +  G K +   +
Sbjct: 384 LDGYEVLKLDRTTLRTMRRSVQMVFQDPFASLDPRMSVGTAIMEPFMEHRLGQKAQAREK 443

Query: 479 VAELLDIVGLRHGDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGI 538
            A+LL+ VGL      R+P EFSGGQ+QRI IAR+L L PK++  DE VSALDVSI+A +
Sbjct: 444 AADLLEKVGLSPDMMKRFPHEFSGGQRQRIAIARSLMLDPKVIVADEAVSALDVSIKAQV 503

Query: 539 INLLLDLQEQFGLSYLFVSHDLSVVKHLAHQVAVMLAGTVVEQGDSEEVFGNPKHEYTRR 598
            NLLLDLQ+   L++LF+SHD++VV+ ++H+VAVM  G +VE G    VF NP+H YT++
Sbjct: 504 CNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAAVFDNPQHPYTKK 563

Query: 599 LLGAVPQPDPARR 611
           L+ AVP PDPARR
Sbjct: 564 LMSAVPVPDPARR 576



 Score =  170 bits (431), Expect = 1e-46
 Identities = 108/271 (39%), Positives = 159/271 (58%), Gaps = 18/271 (6%)

Query: 344 GDASVVVRVRHLVKTYRLAKGVVLRRAIGEVRAVDGISLELRQGRTLGIVGESGSGKSTT 403
           G  S V+ V++L  ++R+  G            V  +S ++    T+ IVGESGSGKS T
Sbjct: 13  GSVSPVLSVQNLTTSFRVDGGWK--------SVVRNMSFDIAPRETVAIVGESGSGKSVT 64

Query: 404 LHEILELAAPQSGSIE----VLGTDVATLGTAERRSLR-RDIQVVFQDPVASLDPRLPVF 458
              I+ L   ++  IE    + G D+  L   E R +R +DI ++FQ+P+ SL+P  P+ 
Sbjct: 65  SLSIMRLLDRKTSRIEGKVMLGGRDLLALPEEEMRKVRGKDISMIFQEPMTSLNPIFPIG 124

Query: 459 DLIAEPLQAN-GFGKNETHARVAELLDIVGLRHGDASR---YPAEFSGGQKQRIGIARAL 514
             IAE L  +     +   A V  LL+ V + +  ASR   YP +FSGG +QR+ IA AL
Sbjct: 125 KQIAEALTVHQDISSSAAKAEVIRLLEKVRIPNA-ASRFGDYPHQFSGGMRQRVMIAMAL 183

Query: 515 ALQPKILALDEPVSALDVSIQAGIINLLLDLQEQFGLSYLFVSHDLSVVKHLAHQVAVML 574
           A +PK+L  DEP +ALDV+IQ  I++L+  LQE+ G+S LF++HD+ VV  +A +  VM 
Sbjct: 184 ASKPKLLIADEPTTALDVTIQGQILDLIKQLQEEEGMSVLFITHDMGVVAEVADRTIVMF 243

Query: 575 AGTVVEQGDSEEVFGNPKHEYTRRLLGAVPQ 605
            G VVE G ++++F   +H YTR LL AVP+
Sbjct: 244 RGDVVETGTTDDIFHRGQHPYTRALLSAVPK 274