Pairwise Alignments

Query, 612 a.a., Probable oligopeptide-transport ATP-binding protein ABC transporter OppD from Mycobacterium tuberculosis H37Rv

Subject, 611 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  477 bits (1227), Expect = e-139
 Identities = 277/612 (45%), Positives = 377/612 (61%), Gaps = 57/612 (9%)

Query: 4   LLEVTDLAVTFRTDGDPVTAVRGISYRVEPGEVVAMVGESGSGKSAAAMAVVGLLP-EYA 62
           +L V +L  +F  DG     VR IS+ V PGE VA+VGESGSGKS  +++++ LL  E +
Sbjct: 15  VLSVRNLTTSFHVDGGWKPVVRDISFDVGPGETVAIVGESGSGKSVTSLSIMRLLDRESS 74

Query: 63  QVRGSVRLQGTELLGLADNAMSRFRGKAIGTVFQDPMSALTPVYTVGDQIAEAIEVHQPR 122
           +V+G + L G  LL L+++AM R RG  +  +FQ+PM++L P++T+GDQI+EA+  HQP 
Sbjct: 75  RVQGEILLGGRNLLSLSEDAMRRVRGNEVAMIFQEPMTSLNPLFTIGDQISEALLCHQP- 133

Query: 123 VGKKAARRRAVELLDLVGISQPQRRSRAFPHELSGGERQRVVIAIAIANDPDLLICDEPT 182
           + K  AR   V LL+ V I     R   +PH  SGG RQRV+IA+A+A+ P LLI DEPT
Sbjct: 134 MSKAEARAETVRLLEKVRIPSAASRFDEYPHRFSGGMRQRVMIAMALASKPKLLIADEPT 193

Query: 183 TALDVTVQAQILDVLKAARDVTGAGVLIITHDLGVVAEFADRALVMYAGRVVESAGVNDL 242
           TALDVT+Q QILD++K  ++  G  VL ITHD+GVVAE ADR +VMY G  VE     D+
Sbjct: 194 TALDVTIQGQILDLIKTLQEEEGTSVLFITHDMGVVAEIADRTVVMYRGEQVEVGATADI 253

Query: 243 YRDRRMPYTVGLLGSVPRLDAAQGTRLVPIPGAPPSLAGLAPGCPFAPRCPLVIDECLTA 302
           +   + PYT  LL +VP L + +G    P+                  R P+V       
Sbjct: 254 FHRGKHPYTRALLSAVPVLGSMKGEER-PL------------------RFPIV------- 287

Query: 303 EPELLDVATDHRAACIRTELVTGRSAADIYRVKTEARPAALGDASV--VVRVRHLVKTYR 360
                                TG +   +       RPA   DAS   V++V  L K + 
Sbjct: 288 ------------------NTATGETQEPV-------RPADTVDASAQPVLKVEGLTKRFD 322

Query: 361 LAKGVVLRRAIGEVRAVDGISLELRQGRTLGIVGESGSGKSTTLHEILELAAPQSGSIEV 420
           +  G+ L R  G V AV+ +S +LR G TL +VGESG GKSTT   I+ L  P +GS+ V
Sbjct: 323 IHSGL-LGRLSGRVHAVENVSFDLRAGETLSLVGESGCGKSTTGRAIMRLIEPDAGSVVV 381

Query: 421 LGTDVATLGTAERRSLRRDIQVVFQDPVASLDPRLPVFDLIAEPLQANGFGK-NETHARV 479
            G ++ TL  +  R +R+ +Q++FQDP ASL+PR+ V   IAEP   +  G   E    V
Sbjct: 382 NGENILTLDKSGMREMRKTVQMIFQDPFASLNPRMTVGAAIAEPFLEHRMGSAREAKEVV 441

Query: 480 AELLDIVGLRHGDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGII 539
           A++L+ VGL    A+RYP EFSGGQ+QRI IARALALQPK++  DE VSALDVSI+A +I
Sbjct: 442 ADMLNKVGLSPDMAARYPHEFSGGQRQRICIARALALQPKVIVADESVSALDVSIKAQVI 501

Query: 540 NLLLDLQEQFGLSYLFVSHDLSVVKHLAHQVAVMLAGTVVEQGDSEEVFGNPKHEYTRRL 599
           NL+LDLQ+   L++LF+SHD++VV+ ++H+VAVM  G +VE G   +VF NP+H+YTR+L
Sbjct: 502 NLMLDLQQSLDLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRADVFDNPQHDYTRKL 561

Query: 600 LGAVPQPDPARR 611
           + AVP PDP RR
Sbjct: 562 MAAVPVPDPDRR 573



 Score =  163 bits (412), Expect = 2e-44
 Identities = 109/278 (39%), Positives = 155/278 (55%), Gaps = 18/278 (6%)

Query: 336 TEARPAALGDASVVVRVRHLVKTYRLAKGVVLRRAIGEVRAVDGISLELRQGRTLGIVGE 395
           T  + A LG    V+ VR+L  ++ +  G            V  IS ++  G T+ IVGE
Sbjct: 2   TMPQAAPLGAEDAVLSVRNLTTSFHVDGGWK--------PVVRDISFDVGPGETVAIVGE 53

Query: 396 SGSGKSTTLHEILELAAPQS----GSIEVLGTDVATLGTAERRSLR-RDIQVVFQDPVAS 450
           SGSGKS T   I+ L   +S    G I + G ++ +L     R +R  ++ ++FQ+P+ S
Sbjct: 54  SGSGKSVTSLSIMRLLDRESSRVQGEILLGGRNLLSLSEDAMRRVRGNEVAMIFQEPMTS 113

Query: 451 LDPRLPVFDLIAEPLQANG-FGKNETHARVAELLDIVGLRHGDASR---YPAEFSGGQKQ 506
           L+P   + D I+E L  +    K E  A    LL+ V +    ASR   YP  FSGG +Q
Sbjct: 114 LNPLFTIGDQISEALLCHQPMSKAEARAETVRLLEKVRIPSA-ASRFDEYPHRFSGGMRQ 172

Query: 507 RIGIARALALQPKILALDEPVSALDVSIQAGIINLLLDLQEQFGLSYLFVSHDLSVVKHL 566
           R+ IA ALA +PK+L  DEP +ALDV+IQ  I++L+  LQE+ G S LF++HD+ VV  +
Sbjct: 173 RVMIAMALASKPKLLIADEPTTALDVTIQGQILDLIKTLQEEEGTSVLFITHDMGVVAEI 232

Query: 567 AHQVAVMLAGTVVEQGDSEEVFGNPKHEYTRRLLGAVP 604
           A +  VM  G  VE G + ++F   KH YTR LL AVP
Sbjct: 233 ADRTVVMYRGEQVEVGATADIFHRGKHPYTRALLSAVP 270