Pairwise Alignments

Query, 612 a.a., Probable oligopeptide-transport ATP-binding protein ABC transporter OppD from Mycobacterium tuberculosis H37Rv

Subject, 630 a.a., ABC transporter, nucleotide binding/ATPase protein (oligopeptide) from Agrobacterium fabrum C58

 Score =  405 bits (1040), Expect = e-117
 Identities = 248/620 (40%), Positives = 353/620 (56%), Gaps = 69/620 (11%)

Query: 4   LLEVTDLAVTFRTDGDPVTAVRGISYRVEPGEVVAMVGESGSGKSAAAMAVVGLLPEYAQ 63
           LL + +L V+F   G  + AVR  S R+ PG+V A+VGESGSGKS     ++G+ P+ A+
Sbjct: 7   LLRIENLRVSFSLMGGTIDAVRDTSLRILPGKVTALVGESGSGKSVIGQTIMGIHPKTAR 66

Query: 64  VRGSVRLQGTE--------LLGLADNA--MSRFRGKAIGTVFQDPMSALTPVYTVGDQIA 113
           V G V     E        LL L  +   +   RG  IG +FQ+PM++ +P++T+G+QI 
Sbjct: 67  VNGRVLFTDPENAAAGPIDLLQLPKDGREIRSIRGNRIGLIFQEPMTSFSPLHTIGNQID 126

Query: 114 EAIEVHQPRVGKKAARRRAVELLDLVGISQPQRRSRAFPHELSGGERQRVVIAIAIANDP 173
           EA+ +H      + A +   E LDLVG S+P++    +P ELSGG RQR +IA+A+   P
Sbjct: 127 EALRIHSILSPAERAEKM-YETLDLVGFSKPKKVVNMYPFELSGGMRQRAMIAMALICRP 185

Query: 174 DLLICDEPTTALDVTVQAQILDVLKAARDVTGAGVLIITHDLGVVAEFADRALVMYAGRV 233
            LLI DEPTTALDVT+QAQIL +L+  +      +L+ITHDLGVVA  AD   V+Y G +
Sbjct: 186 ALLIADEPTTALDVTIQAQILKLLRDLQSRLNMSMLLITHDLGVVANIADEVAVIYQGEI 245

Query: 234 VESAGVNDLYRDRRMPYTVGLLGSVPRLDAAQGTRLVPIPGAPPSLAGLAPGCPFAPRCP 293
           +E+  V+D+++    PY  GL+ +VP  D   G RL                        
Sbjct: 246 MEAGTVDDIFKAPGHPYLKGLMAAVPHFDMKPGERL------------------------ 281

Query: 294 LVIDECLTAEPELLDVATDHRAACIRTELVTGRSAADIYRVKTEARPAALGDASVVVRVR 353
                       L ++  DH       E + G+  A + +      P  L      + V 
Sbjct: 282 ----------KALREIKVDH-------ESLVGKKTAAVNKT-----PGPL------LTVD 313

Query: 354 HLVKTYRLAKGVVLRRA-IGEVRAVDGISLELRQGRTLGIVGESGSGKSTTLHEILELAA 412
           ++ KT+   K    R++     +AV+ +S E+ +G  LG+VGESGSGK+T    ++    
Sbjct: 314 NISKTFTTRKSSWFRKSDANATKAVNSVSFEICRGECLGLVGESGSGKTTVSKILMRAVR 373

Query: 413 PQSGSIEVL----GTDVATLGTAERRSLRRDIQVVFQDPVASLDPRLPVFDLIAEPLQAN 468
           P  GSI         DV      + + LR  IQ+VFQDP++SL PR+ V ++++EPL+ +
Sbjct: 374 PDEGSITFHRPEGDIDVLNAKDGDLKELRSKIQMVFQDPISSLSPRMTVGNILSEPLEIH 433

Query: 469 GFGKNETHA-RVAELLDIVGLRHGDASRYPAEFSGGQKQRIGIARALALQPKILALDEPV 527
           G G  +  A +V  L+  +GL     +RYP  FSGGQ+QRIGIARALAL P++L  DEPV
Sbjct: 434 GRGDAKYRAEKVRGLVRAIGLGESALNRYPHSFSGGQRQRIGIARALALGPELLICDEPV 493

Query: 528 SALDVSIQAGIINLLLDLQEQFGLSYLFVSHDLSVVKHLAHQVAVMLAGTVVEQGDSEEV 587
           SALDVS+QA I+NLL DLQ+  GL+YLF+SH+L+VV ++A +VAVM  G +VE    E +
Sbjct: 494 SALDVSVQAQILNLLKDLQQDLGLTYLFISHNLAVVDYMADRVAVMCEGRIVELAPREIL 553

Query: 588 FGNPKHEYTRRLLGAVPQPD 607
             +P H YT+ LL AVP PD
Sbjct: 554 MRSPIHPYTKSLLAAVPFPD 573



 Score =  164 bits (415), Expect = 1e-44
 Identities = 106/268 (39%), Positives = 152/268 (56%), Gaps = 16/268 (5%)

Query: 3   PLLEVTDLAVTFRT---------DGDPVTAVRGISYRVEPGEVVAMVGESGSGKSAAAMA 53
           PLL V +++ TF T         D +   AV  +S+ +  GE + +VGESGSGK+  +  
Sbjct: 308 PLLTVDNISKTFTTRKSSWFRKSDANATKAVNSVSFEICRGECLGLVGESGSGKTTVSKI 367

Query: 54  VV-GLLPEYAQVRGSVRLQGTELLGLADNAMSRFRGKAIGTVFQDPMSALTPVYTVGDQI 112
           ++  + P+   +         ++L   D  +   R K I  VFQDP+S+L+P  TVG+ +
Sbjct: 368 LMRAVRPDEGSITFHRPEGDIDVLNAKDGDLKELRSK-IQMVFQDPISSLSPRMTVGNIL 426

Query: 113 AEAIEVHQPRVGKKAARRRAVELLDLV-GISQPQRRSRAFPHELSGGERQRVVIAIAIAN 171
           +E +E+H    G+  A+ RA ++  LV  I   +     +PH  SGG+RQR+ IA A+A 
Sbjct: 427 SEPLEIH----GRGDAKYRAEKVRGLVRAIGLGESALNRYPHSFSGGQRQRIGIARALAL 482

Query: 172 DPDLLICDEPTTALDVTVQAQILDVLKAARDVTGAGVLIITHDLGVVAEFADRALVMYAG 231
            P+LLICDEP +ALDV+VQAQIL++LK  +   G   L I+H+L VV   ADR  VM  G
Sbjct: 483 GPELLICDEPVSALDVSVQAQILNLLKDLQQDLGLTYLFISHNLAVVDYMADRVAVMCEG 542

Query: 232 RVVESAGVNDLYRDRRMPYTVGLLGSVP 259
           R+VE A    L R    PYT  LL +VP
Sbjct: 543 RIVELAPREILMRSPIHPYTKSLLAAVP 570