Pairwise Alignments

Query, 1234 a.a., Probable transcription-repair coupling factor Mfd (TRCF) from Mycobacterium tuberculosis H37Rv

Subject, 1123 a.a., transcription-repair coupling factor from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  537 bits (1383), Expect = e-156
 Identities = 278/631 (44%), Positives = 417/631 (66%), Gaps = 13/631 (2%)

Query: 507  AKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAKNT 566
            +K   + +  +L  GD V H  +GIGRF  + +  VGG  +E + L Y         ++ 
Sbjct: 427  SKAMTLKELRSLQPGDYVTHTDYGIGRFAGLEKVEVGGRLQEAIRLVY---------RDD 477

Query: 567  DKLYVPMDSLDQLSRYVG--GQAPALSRLGGSDWANTKTKARRAVREIAGELVSLYAKRQ 624
            D LYV + +L ++S+Y G  G  P++S+LG  +W N K K +  V++IA EL+SLYAKR+
Sbjct: 478  DLLYVSIHALHKISKYSGKEGGPPSMSKLGSPEWENKKKKVKSKVKDIAHELISLYAKRK 537

Query: 625  ASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTE 684
            A+PG+A++ D   QAELE +F + +T DQ  A E+VKADME+P PMDR++CGDVG+GKTE
Sbjct: 538  AAPGYAYTRDGFLQAELESSFIYEDTPDQGKATEDVKADMEQPHPMDRLVCGDVGFGKTE 597

Query: 685  IAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVI 744
            IA+RAAFKA  DGKQVA+LVPTT+LA QH +TF +R+  FPVT+  ++RF  A +++  +
Sbjct: 598  IAIRAAFKAACDGKQVAILVPTTILAMQHYRTFRDRLEQFPVTVDYVNRFKTAKDTKDTL 657

Query: 745  DGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSA 804
              +A+G VDI+IGTHR++   V++KDLGL+++DEEQ+FGV+ KE +K ++ +VD LT++A
Sbjct: 658  KRVAEGKVDILIGTHRIVSKDVKFKDLGLMIIDEEQKFGVKTKEKLKEMKINVDTLTLTA 717

Query: 805  TPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQIAAALRRELLRDGQAFYVH 864
            TPIPRTL  SL G R++S I TPP  R PV T +   D+  I  A+  E+ R GQ F+VH
Sbjct: 718  TPIPRTLHFSLMGARDLSVIATPPPNRQPVKTELHVFDEALIRDAIVYEMKRGGQVFFVH 777

Query: 865  NRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLD 924
            NR+  I+  AA +   VP+ +V  AHGQM  + LE  + +F N E+D+LV T I+E+GLD
Sbjct: 778  NRIKDIEEIAAMILRHVPDCKVTYAHGQMEPEKLEKRMMKFVNGEYDVLVSTNIIESGLD 837

Query: 925  ISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQN 984
            I NANT+I+ RA  FGLS LHQ+RGRVGRS ++ Y Y L PP   L   A  RL+T+ + 
Sbjct: 838  IENANTIIINRAHMFGLSDLHQMRGRVGRSNKKAYCYLLTPPVAGLPSDARKRLSTLEEF 897

Query: 985  NELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGFDLYVRLVGEALETYRDA-YRAAAD 1043
            ++LG G  +A++DL+IRGAGN+LG EQSG +  +GF++Y +++ +A++  ++  +R    
Sbjct: 898  SDLGEGFKIAMRDLDIRGAGNLLGGEQSGFITDLGFEMYHQVLDDAIKELKETEFRDLFL 957

Query: 1044 GQTVRTAEEP-KDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAASSDREVAAVVDELTD 1102
               +    EP ++  I+  ++  +P  Y+++   RL  Y +L +    +E+  + + + D
Sbjct: 958  NDNLAEFIEPVRECNIETDMEVLIPDWYVSNISERLNLYSKLDSTKDLQELEKLRESIVD 1017

Query: 1103 RYGALPEPARRLAAVARLRLLCRGSGITDVT 1133
            R+G LPE  ++L  + +LR   +  G   +T
Sbjct: 1018 RFGPLPEAVQQLVEIVKLRWQAQQLGFEKLT 1048



 Score = 53.5 bits (127), Expect = 1e-10
 Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 1/99 (1%)

Query: 132 VVVTSVRSLLQPMTPQLGMME-PLTLTVGDESPFDGVVARLVELAYTRVDMVGRRGEFAV 190
           ++VT   +L + +  +  ++E  L   +G++     +   L E  + R + V   G++AV
Sbjct: 123 LIVTYPEALTEKVINKKSLVENTLGAKIGEKLDTTFLSEMLAEYGFERTEFVYEAGQYAV 182

Query: 191 RGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSI 229
           RGGI+D+++   + P R+E +GDEI  +R F    Q S+
Sbjct: 183 RGGIVDVYSYANDLPYRIELFGDEIESIRTFDPDTQLSV 221