Pairwise Alignments

Query, 1234 a.a., Probable transcription-repair coupling factor Mfd (TRCF) from Mycobacterium tuberculosis H37Rv

Subject, 1159 a.a., transcription-repair coupling factor from Serratia liquefaciens MT49

 Score =  640 bits (1650), Expect = 0.0
 Identities = 416/1139 (36%), Positives = 611/1139 (53%), Gaps = 96/1139 (8%)

Query: 22   SAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQGPLLVVTATGREADDLAAELRG 81
            S+ +   L +RAG       L   A A           GP++++    + A  L  E++ 
Sbjct: 12   SSSSRYSLPERAGDLRQLGQLTGSACAVECAEIVERHNGPVMLIAPDMQNALRLRDEIQQ 71

Query: 82   VFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAHPDDAQLGPPLGVVVTSVRSLL 141
                 V  L  WETLP++  SP  + +  RL +L  L  P  A+     GV++  V +L+
Sbjct: 72   FTDQMVTTLSDWETLPYDSFSPHQEIISARLSSLYHL--PTMAR-----GVIILPVNTLM 124

Query: 142  QPMTPQLGMM-EPLTLTVGDESPFDGVVARLVELAYTRVDMVGRRGEFAVRGGILDIFAP 200
            Q + P   +    L +  G     D + A+L +  Y  VD V   GEFA RG +LD+F  
Sbjct: 125  QRVCPHKFLHGHALVMKKGQRLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLFPM 184

Query: 201  TAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAFACRELLLSEDVRARAAQLAA 260
             +E P R++F+ DEI  +R F V +QR++ E++   L+     E    ++    A +L  
Sbjct: 185  GSEEPYRIDFFDDEIDSLRTFDVDNQRTLNEVEAINLLP--AHEFPTDKN----AIELFR 238

Query: 261  RHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDGHALLTDQLPDGTPVLVCDP- 319
                 +  V   A  +  ++++G    G+E   P+ +S     L   LP+ T ++     
Sbjct: 239  SQWREQFEVRRDAEHIYQQVSKGTWPAGIEYWQPLFFSQPLPSLFSYLPENTLIVNTGNL 298

Query: 320  ------------EKVRTRAAD-----------LIRTGREFLEA-SWSVAALGTAENQAPV 355
                        ++  +R  D            +R    F E  +W   AL T E  A  
Sbjct: 299  ENAADRFWLDVNQRYESRRVDPMRPLLAPPSLWLRVDELFSELKAWPRMALKTEELPAKA 358

Query: 356  DVEQLGGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIF 415
                L      +L    A  A+   P   L + ++  + +  +  +  + G +  + ++ 
Sbjct: 359  GNTNLDYRTLPDL----AVQAQQKAPLDNLRRFTE--SFDGSIIFSVESEGRRETLQDLL 412

Query: 416  AMLRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRD 475
              ++   A                 +++ L +++ PAG        +  +VG  +    D
Sbjct: 413  GRIKLSTA-----------------LIQHLDQAE-PAG--------RYMMVGASERGFLD 446

Query: 476  GVIIPGANLVVITETDLTGSRVSAA-EGKRLAAKRRNIVDPLA-LTAGDLVVHDQHGIGR 533
            G+     N  +I E+DL G RVS   +  R       ++  LA L  G  VVH +HG+GR
Sbjct: 447  GM----RNRALICESDLLGERVSRRRQDNRRTINTDVLIRNLAELHPGQPVVHLEHGVGR 502

Query: 534  FVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGG---QAPAL 590
            +V +     GG + EYL+L YA           DKLYVP+ SL  +SRY GG    AP L
Sbjct: 503  YVGLTTLEAGGIKAEYLILAYAGE---------DKLYVPVSSLHLISRYAGGADENAP-L 552

Query: 591  SRLGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTET 650
             +LGG  W   + KA   VR++A EL+ +YA+R A  G AF  +         +F F  T
Sbjct: 553  HKLGGDAWTRARQKAAERVRDVAAELLDIYAQRAAKTGFAFKHNREQYQLFCQSFPFETT 612

Query: 651  VDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLA 710
             DQ  AI  V +DM +P+ MDR++CGDVG+GKTE+A+RAAF AV++GKQVAVLVPTTLLA
Sbjct: 613  PDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENGKQVAVLVPTTLLA 672

Query: 711  DQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKD 770
             QH   F +R + +P+ I+ +SRF  A E + V+D   DG VDI+IGTH+LLQ+ +RWKD
Sbjct: 673  QQHFDNFRDRFATWPIRIEMMSRFRSAKEQQQVMDDAVDGKVDIIIGTHKLLQSDLRWKD 732

Query: 771  LGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEE 830
            LGL++VDEE RFGV HKE IK++R  VD+LT++ATPIPRTL M+++G+R++S I TPP  
Sbjct: 733  LGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR 792

Query: 831  RYPVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAH 890
            R  V T+V  +D   +  A+ RE+LR GQ +Y++N V +I+ AA ++ ELVPEAR+ + H
Sbjct: 793  RLAVKTFVREYDSLVVREAILREVLRGGQVYYLYNDVENIEKAAEKLAELVPEARIAIGH 852

Query: 891  GQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGR 950
            GQM E  LE  +  F ++  ++LVCTTI+ETG+DI +ANT+I+ERAD FGL+QLHQLRGR
Sbjct: 853  GQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADRFGLAQLHQLRGR 912

Query: 951  VGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIE 1010
            VGRS  + YAY L P    ++  A+ RL  IA   +LGAG A+A  DLEIRGAG +LG +
Sbjct: 913  VGRSHHQAYAYLLTPNPKAMSTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGED 972

Query: 1011 QSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDY 1070
            QSG +  VGF LY+ L+  A++  +     + +  T    E      ++L + A LP DY
Sbjct: 973  QSGQMTTVGFSLYMELLESAVDALKHGREPSLEDLTSNQTE------VELRMPALLPDDY 1026

Query: 1071 IASDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGI 1129
            I     RL  Y+R+A+A +D E+  +  EL DR+G LP+ AR L   A LR   +  GI
Sbjct: 1027 IPDVNTRLSFYKRIASAKNDAELEELKVELIDRFGLLPDAARNLLQSAALRQHAQKLGI 1085