Pairwise Alignments

Query, 351 a.a., tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 374 a.a., tRNA 2-thiouridylase from Pseudomonas simiae WCS417

 Score =  202 bits (513), Expect = 1e-56
 Identities = 137/357 (38%), Positives = 185/357 (51%), Gaps = 16/357 (4%)

Query: 2   KIAVALSGGTDSLFALLLLLEQGQDVFGLHARFLPPR--ADQPSGNPDPAEAIGAMCARL 59
           ++ V +SGG DS  + +LL+EQG +V GL  +        +  +   D A+A  A+C ++
Sbjct: 13  RVIVGMSGGVDSSVSAVLLMEQGYEVEGLFMKNWEEDDGTEYCTAMDDLADA-QAVCDKI 71

Query: 60  GVDFHAVDLADAFEEAVVAPFIEEYVVGRTPNPCARCNATMKFGLLLDAARALGAARLAT 119
           G+  H  + A  + + V   F+ EY  GRTPNP   CN  +KF   LD A  LGA  +AT
Sbjct: 72  GIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYAMMLGADLIAT 131

Query: 120 GHYVRQLRHPQWGMTLQRGADPAKDQSYFLSLVDRARLEQAVFPLGNWRKEQVKAELVKR 179
           GHYVR+ R       L +G DP KDQSYFL  V   ++ + +FP+G   K +V+    K 
Sbjct: 132 GHYVRR-RDIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKTLFPVGELEKPEVRRIAEKH 190

Query: 180 NIVPPLPSESQEICFVPGDDYRAFLRDRQVRLPGPGPIVTMRGRKIGSHKGLWQYTEGQR 239
            +      +S  ICF+    +  FL  +Q     PG I T  G  IG H GL  +T GQR
Sbjct: 191 GLATAKKKDSTGICFIGERRFSDFL--KQYLPAQPGEIKTTEGEVIGRHHGLMYHTIGQR 248

Query: 240 RGLGI-----AWEEPLYVVSKDMENNVLLVG-GREH-LAARGCLTEDVNLLVDPAD--WP 290
           +GLGI     A EEP YV+ KD+E+N L+VG G EH L   G L       V+P D   P
Sbjct: 249 QGLGIGGLKDAGEEPWYVLIKDLEHNELIVGQGNEHPLLFSGALLASEIYWVNPIDLSTP 308

Query: 291 AEISVRTRYRQAPQPARVTVGDTGMAVRFREPQTPPARGQVAAVYDAEGHVLAGGVI 347
             ++ + RYRQ+ QP  +    TG    F +PQ     GQ    YD E   L GGVI
Sbjct: 309 RRLTAKVRYRQSDQPCTLEKTATGYRAIFDDPQRAVTPGQSVVFYDGE-ICLGGGVI 364