Pairwise Alignments

Query, 351 a.a., tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 374 a.a., tRNA-specific 2-thiouridylase MnmA from Pseudomonas putida KT2440

 Score =  203 bits (517), Expect = 5e-57
 Identities = 140/359 (38%), Positives = 189/359 (52%), Gaps = 20/359 (5%)

Query: 2   KIAVALSGGTDSLFALLLLLEQGQDVFGLHARFLPPR--ADQPSGNPDPAEAIGAMCARL 59
           ++ V +SGG DS  + LLL+EQG  V GL  +        +  +   D A+A  A+C R+
Sbjct: 13  RVIVGMSGGVDSSVSALLLIEQGYQVEGLFMKNWEEDDGTEYCTAREDLADA-QAVCDRI 71

Query: 60  GVDFHAVDLADAFEEAVVAPFIEEYVVGRTPNPCARCNATMKFGLLLDAARALGAARLAT 119
           G+  H  + A  + + V   F+EEY  GRTPNP   CN  +KF   LD A +LGA  +AT
Sbjct: 72  GIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALSLGADLIAT 131

Query: 120 GHYVRQLRHPQWGMT-LQRGADPAKDQSYFLSLVDRARLEQAVFPLGNWRKEQVKAELVK 178
           GHYVR  R     +T L +G DP KDQSYFL  V    + + +FP+G   K +V+A   K
Sbjct: 132 GHYVR--RRDTGALTELLKGLDPNKDQSYFLHAVGGQEIARTLFPVGELEKPEVRAIAEK 189

Query: 179 RNIVPPLPSESQEICFVPGDDYRAFLRDRQVRLPGPGPIVTMRGRKIGSHKGLWQYTEGQ 238
             +      +S  ICF+    +  FL  +Q     PG I T  G  IG H GL  +T GQ
Sbjct: 190 HGLATAKKKDSTGICFIGERRFSDFL--KQYLPAQPGDIETTEGEVIGRHHGLMYHTIGQ 247

Query: 239 RRGLGI-----AWEEPLYVVSKDMENNVLLVG-GREH--LAARGCLTEDVNLLVDPADW- 289
           R+GLGI     A +EP YV+ KD+  NVL+VG G EH  L +R  L  ++   V+P D  
Sbjct: 248 RQGLGIGGLKDASDEPWYVLHKDLARNVLVVGQGNEHPWLFSRALLASEI-FWVNPVDLG 306

Query: 290 -PAEISVRTRYRQAPQPARVTVGDTGMAVRFREPQTPPARGQVAAVYDAEGHVLAGGVI 347
            P +++ + RYRQ+ Q   +    +G    F EPQ     GQ    YD E   L GGVI
Sbjct: 307 SPRQLTAKVRYRQSDQRCTLERTASGYRAVFDEPQRAVTPGQSVVFYDGE-VCLGGGVI 364