Pairwise Alignments

Query, 640 a.a., putative PAS/PAC sensor protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440

 Score = 45.4 bits (106), Expect = 1e-08
 Identities = 34/148 (22%), Positives = 69/148 (46%), Gaps = 6/148 (4%)

Query: 238 VSPALCAICGYTRDELVGRSAREF--YFTSTARKRIVSQLIKRAEVENGEVTLRRKDGSP 295
           ++PA     G++  +++GR+A E   +  S  R + + Q+I+   + N  V L  ++G P
Sbjct: 438 INPAFTQTFGWSSAQVLGRTAEEIGLWAESVERAKRIEQVIREQALSNVAVVLNHRNGDP 497

Query: 296 LALWYTAE--SIRDAAGRMVAYSGYFQERPFAFSSKLASD-FSRVVDALPGLAWVCGRDL 352
           L    ++   ++ D    +       Q++    + K + + F++   + P    +  R  
Sbjct: 498 LTCVISSRLITVDDQPCSVTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAITITERHS 557

Query: 353 -RIVAVNDAYLAAYGRTRDEVMGRTEYD 379
            R + VND +    G + DEV+G T Y+
Sbjct: 558 GRYLEVNDGFCRLTGYSTDEVIGHTVYE 585



 Score = 34.3 bits (77), Expect = 3e-05
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 238 VSPALCAICGYTRDELVGRSARE--FYFTSTARKRIVSQLIKRAEVENGEVTLRRKDGSP 295
           V+   C + GY+ DE++G +  E   +     R  ++++L +R  V + E+  R K G  
Sbjct: 563 VNDGFCRLTGYSTDEVIGHTVYEIGIWADDKQRSALLAELRERGRVHHREMLGRNKRGDI 622

Query: 296 LALWYTAESI 305
           L +  + E I
Sbjct: 623 LTVEVSVEPI 632