Pairwise Alignments

Query, 864 a.a., MscS Mechanosensitive ion channel (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 1102 a.a., mechanosensitive channel protein, intermediate (smaller, MscS-like) conductance, K+ efflux from Pseudomonas putida KT2440

 Score =  172 bits (436), Expect = 1e-46
 Identities = 120/363 (33%), Positives = 185/363 (50%), Gaps = 5/363 (1%)

Query: 463  RLAIPFFLVGLAVAVALQLGAVLVALVTLLAERLPEKGMRALLRGLVLGLGAPAMWVVA- 521
            RLA    L   A A     G V+    TL  E++ ++ +R +   L+ G  A   WV A 
Sbjct: 736  RLAYQRALTKRAAAKEGLDGEVITEEPTLDIEQVNQQSLRLIRLALLGGFIAGLYWVWAD 795

Query: 522  AATLLPWMSAFPGGPYMMRQALELNVNVGSVSFNSLRVLGLVLLFYLTRSAIAVGTSFLD 581
              ++  +++ F    Y          ++  +S   L  LG +++  +T +        L+
Sbjct: 796  LISVFAYLNNFV--LYEYTSGTGAAASMVPISLGDL--LGALVIVGITFALAGNLPGLLE 851

Query: 582  NLPARLPRVERGVIPPLQTGLTYALWALFGLVVLNALGVSLTSLTVIAGGLSVGLGFGLQ 641
             L      + +G      T L+Y +  +  +  L+ LGVS   L  +   LSVGLGFG+Q
Sbjct: 852  VLVLSRLNLAQGSAYATTTLLSYTIVGIGIVSTLSTLGVSWDKLQWLVAALSVGLGFGMQ 911

Query: 642  TIFNNFFSGLILIFGRSLLEGDIIQIGETWGTVRKISIRSTTVETFDNAVIFVPNSEFVS 701
             IF NF SG++++F R +  GD I IG   GTV KI IR+TT+  FD   I VPN  F++
Sbjct: 912  EIFANFISGIMILFERPVRIGDTITIGNLSGTVSKIRIRATTITDFDRKDIIVPNKTFIT 971

Query: 702  NRLTNWTRNSMRMRRDIAIGVAYGSDIDKVTELLKQAAEDHPRVMRDPAPNVLFQDFGPS 761
             +L NW+      R  + +G+ YGSD+D V +LL + A ++PRV++DP P V F +FG S
Sbjct: 972  GQLINWSLTDTVTRVTLKLGIDYGSDLDLVRDLLLKGAHENPRVLKDPEPIVYFLNFGES 1031

Query: 762  SLDFVLRVWVDDLNHGVSTASDLRRTIDRLFRENAIEISFPQMDVHVRGIEGMPVSTAAL 821
            SLD  LR+ V DL     T  ++ R I+R F+ + I+IS  Q++V +   +G       +
Sbjct: 1032 SLDHELRMHVRDLGDRNPTLDEINRYINREFKAHNIKISVRQVEVFLMDAKGSKQQLIPM 1091

Query: 822  ASP 824
              P
Sbjct: 1092 EQP 1094



 Score = 38.9 bits (89), Expect = 2e-06
 Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 12/171 (7%)

Query: 95  RKALPDMVKALDSQVAAMQRDYQRLFALYQLSRNHPSEMAAIRRQMAGVQRTLQGRLAPM 154
           +KAL  +++   S +AA + + ++L AL Q   + P E +  ++++A ++ T    +A  
Sbjct: 50  QKALQQVLEQTLSLLAAKEDNEKKLAALKQQLSSAPKETSDSQKELAKLKETKAQPVAQR 109

Query: 155 EATDAA--VRQRLDDFTALDKELSEHLATERSSDLSKDL--SEYLAKLNEGRKNLTTLRT 210
            AT     + Q L +      EL + L+   S  ++         A+++  +     +  
Sbjct: 110 YATLTVPQLEQMLSERNTQQGELQKALSEANSLIINSQTRPERAQAEISSSQTRTQQINN 169

Query: 211 RLARALDPGQAVNAKLTQALEQIDAQLP-----TLWRTYYLVASSSLMDLG 256
            L    D G+A+NA       Q++A+L      TL R   L  +S L DLG
Sbjct: 170 ILKTGKDGGKAINA---DQRNQLNAELASLNALTLLRRQELAGNSLLQDLG 217