Pairwise Alignments

Query, 864 a.a., MscS Mechanosensitive ion channel (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 294 a.a., small-conductance mechanosensitive channel MscS from Erwinia tracheiphila SCR3

 Score =  127 bits (319), Expect = 9e-34
 Identities = 82/277 (29%), Positives = 143/277 (51%), Gaps = 17/277 (6%)

Query: 535 GPYMMR-QALELNVNVGSVSFNSLRVLGLVLLFYLTRSAIAVGTSFLDNLPARLPRVERG 593
           G +++R QAL L+  V  V+  ++ ++G+++       A  +  +    L AR   ++  
Sbjct: 14  GSWLVRNQALLLSYAVNIVAAIAILIVGMIM-------ARLISNTLNKLLVAR--HIDAT 64

Query: 594 VIPPLQTGLTYALWALFGLVVLNALGVSLTSLTVIAGGLSVGLGFGLQTIFNNFFSGLIL 653
           V+  L   + Y L A   +  L  +GV   S+  + G   + +G  LQ   +N  +G++L
Sbjct: 65  VVDFLSALVRYGLIAFTFIAALGRIGVQTASVIAVLGAAGLAVGLALQGSLSNLAAGVLL 124

Query: 654 IFGRSLLEGDIIQIGETWGTVRKISIRSTTVETFDNAVIFVPNSEFVSNRLTNWTRNSMR 713
           +  R    GD I IG   GTV  + I STT+++ D  ++ VPN + ++  + N++R  +R
Sbjct: 125 VMFRPFRTGDFIDIG-VMGTVTSVQIFSTTLKSSDGKIVVVPNGKIIAGNIVNYSREPVR 183

Query: 714 MRRDIAIGVAYGSDIDKVTELLKQAAEDHPRVMRDPAPNVLFQDFGPSSLDFVLRVW--V 771
            R +  IGV+Y +D+D V +L ++  +  PRV++D    +   +   SS++FV+R W   
Sbjct: 184 -RNEFIIGVSYDADVDNVIKLFQEVVDAEPRVLQDRGVQIGLNELAASSMNFVVRCWSNA 242

Query: 772 DDLNHGVSTASDLRRTIDRLFRENAIEISFPQMDVHV 808
            DL    +   DL +   R    N I I +PQMDVH+
Sbjct: 243 GDLQ---NVYWDLMKNFKRALDANDIGIPYPQMDVHL 276