Pairwise Alignments

Query, 864 a.a., MscS Mechanosensitive ion channel (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 1107 a.a., mechanosensitive channel protein, miniconductance from Escherichia coli BL21

 Score =  127 bits (318), Expect = 5e-33
 Identities = 80/261 (30%), Positives = 129/261 (49%), Gaps = 10/261 (3%)

Query: 560  LGLVLLFYLTRSAIAVGTSFLDNLPARLPR-------VERGVIPPLQTGLTYALWALFGL 612
            LG VL+  L      + T  + NLPA L         +  G    + T   Y L  + GL
Sbjct: 831  LGAVLIAILV---FIITTQLVRNLPALLELAILQHLDLTPGTGYAITTITKYLLMLIGGL 887

Query: 613  VVLNALGVSLTSLTVIAGGLSVGLGFGLQTIFNNFFSGLILIFGRSLLEGDIIQIGETWG 672
            V  + +G+  + L  +   L VGLGFGLQ IF NF SGLI++F + +  GD + I +  G
Sbjct: 888  VGFSMIGIEWSKLQWLVAALGVGLGFGLQEIFANFISGLIILFEKPIRIGDTVTIRDLTG 947

Query: 673  TVRKISIRSTTVETFDNAVIFVPNSEFVSNRLTNWTRNSMRMRRDIAIGVAYGSDIDKVT 732
            +V KI+ R+TT+  +D   I VPN  F++ +  NW+ +    R  + I     ++ ++VT
Sbjct: 948  SVTKINTRATTISDWDRKEIIVPNKAFITEQFINWSLSDSVTRVVLTIPAPADANSEEVT 1007

Query: 733  ELLKQAAEDHPRVMRDPAPNVLFQDFGPSSLDFVLRVWVDDLNHGVSTASDLRRTIDRLF 792
            E+L  AA     V+ +PAP V   D       F LR++  ++ H +    ++ + I   F
Sbjct: 1008 EILLTAARRCSLVIDNPAPEVFLVDLQQGIQIFELRIYAAEMGHRMPLRHEIHQLILAGF 1067

Query: 793  RENAIEISFPQMDVHVRGIEG 813
              + I++ FP   + +  + G
Sbjct: 1068 HAHGIDMPFPPFQMRLESLNG 1088



 Score = 43.1 bits (100), Expect = 9e-08
 Identities = 38/163 (23%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 82  QELSTLVEETDRLRKALPDMVKALDSQVAAMQR---DYQRLFALYQLSRNHPSEMAAIRR 138
           ++++  +E+    + A P++V+AL S + A++      +R+    Q+  N+P   A +R 
Sbjct: 26  KQITQELEQAKAAKPAQPEVVEALQSALNALEERKGSLERIKQYQQVIDNYPKLSATLRA 85

Query: 139 QMAGVQRTLQGRLAPMEATDAAVRQRLD-DFTALDKELSEHLATERSSDLSKDLSEYLAK 197
           Q+  + R     ++P  +TDA  ++ L      LDK        ER+ +++  L++   +
Sbjct: 86  QLNNM-RDEPRSVSPGMSTDALNQEILQVSSQLLDKSRQAQQEQERAREIADSLNQLPQQ 144

Query: 198 LNEGRKNLTTLRTRLARALDPGQAVNAKLTQALEQIDAQLPTL 240
             + R+ L  +  RL   L     +N     AL+   A+L  L
Sbjct: 145 QTDARRQLNEIERRLG-TLTGNTPLNQAQNFALQSDSARLKAL 186



 Score = 37.0 bits (84), Expect = 6e-06
 Identities = 53/217 (24%), Positives = 91/217 (41%), Gaps = 23/217 (10%)

Query: 48  QATAQAADAALPGDTQQDAPDGQQAMDIIWQTRGQELSTL--VEETDRLRKALPDMVKAL 105
           Q ++Q  D +     QQ+    ++  D + Q   Q+      + E +R    L       
Sbjct: 112 QVSSQLLDKSR--QAQQEQERAREIADSLNQLPQQQTDARRQLNEIERRLGTLTGNTPLN 169

Query: 106 DSQVAAMQRDYQRLFALY------QLSRNHPSEMAAIRRQMAGVQRTLQGRLAPMEATDA 159
            +Q  A+Q D  RL AL       QLS N+  E+A +R ++A      +     ++A   
Sbjct: 170 QAQNFALQSDSARLKALVDELELAQLSANNRQELARLRSELA------EKESQQLDAYLQ 223

Query: 160 AVRQRLDDFTALDKEL---SEHLATERSSDLSKDLSEYLAKLNEGRKNLTTLRTRLARAL 216
           A+R +L+    L+ E    S  L  E S+DL KD+     K+N   + L+    + A+ +
Sbjct: 224 ALRNQLNSQRQLEAERALESTELLAENSADLPKDIVAQF-KIN---RELSAALNQQAQRM 279

Query: 217 DPGQAVNAKLTQALEQIDAQLPTLWRTYYLVASSSLM 253
           D   +   +      Q+   L TL      + SS+L+
Sbjct: 280 DLVASQQRQAASQTLQVRQALNTLREQSQWLGSSNLL 316