Pairwise Alignments

Query, 277 a.a., type III secretion apparatus lipoprotein, YscJ/HrcJ family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 273 a.a., type III secretion protein from Pseudomonas simiae WCS417

 Score =  127 bits (320), Expect = 2e-34
 Identities = 81/229 (35%), Positives = 125/229 (54%), Gaps = 11/229 (4%)

Query: 20  LAVFLLMLLTGC--KAELYKGLNEEQANTMLATLLRHGVPAEKLAAGKEGYALSVERDQI 77
           L + L +LL  C  + EL++ L E++AN ++A L    + A K+ A K+G  + V   +I
Sbjct: 9   LVICLSLLLQACSERVELHRQLTEQEANEVVAELADKHIRATKVPA-KDGVIVVVNATEI 67

Query: 78  VRALEILRENSLPREQYQNLGKVFSGDGMIASPSEEKARLAYAISQELSDTFSRIDGVLT 137
            RA+  L    LPR     LG  F  +G+I++P EE+AR  YA+SQEL  T S IDGV+ 
Sbjct: 68  ARAVRTLEAVGLPRAARTTLGNTFRKEGVISTPLEERARYIYALSQELETTLSNIDGVIV 127

Query: 138 ARVHVVLASSETASETRVPASAAVFLRHGPESPVVNLIPKIRELAAKAVPGL-----DYE 192
           ARVHVVL       E   PASA+VF++H P     ++  ++R + A ++PG+     + +
Sbjct: 128 ARVHVVLPERVAPGEPVQPASASVFIKHDPRLDPDSIRARVRRMVASSLPGMATAVDNSQ 187

Query: 193 RVSVMLVPVRETVTVPMQQGATLFGMPLPSESGPSYLLVAAGVTLLAAL 241
           +++V+ VP    +    QQ    FG  L  E    +  +   V+LLA +
Sbjct: 188 KLTVVFVPATAYLE---QQRLAYFGPFLVPEDDLGFWRICVTVSLLAVV 233