Pairwise Alignments

Query, 1000 a.a., diguanylate cyclase with PAS/PAC and GAF sensors (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 642 a.a., GGDEF domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  159 bits (401), Expect = 7e-43
 Identities = 133/431 (30%), Positives = 208/431 (48%), Gaps = 19/431 (4%)

Query: 556 DINEQRTAQQAQEDSERRYRALFENAQVGIFRTRISDGRFMEANSRIIEMYGWPDRAEFM 615
           DI E+  A     +SE R   + E + VG+  +R  DG+ + ANSR  ++ G   R EF+
Sbjct: 214 DITERSEAAARLAESEARLWRMLEESPVGVSVSRRRDGKVVFANSRFTDIIGM-SREEFL 272

Query: 616 EKMRSTEWYVDSEARGRMVGTLLRRGEFRNIEVEMRRRDGSTVWFEYS-GKLDGDTI--- 671
              ++ E YVD   R  ++  L R G   + EVE RR++GS  W   +   LD +     
Sbjct: 273 GS-KAREHYVDDAQRQVVLAMLRRDGRLDDAEVEFRRKNGSPFWSLLTIHPLDFENEPVN 331

Query: 672 IGVAQDVTQRRAAEAARQRSEAHYRLLFEAAADAIFLHDPEGKFLDVNEVACRRLGYTRR 731
           +    D+T+R+AAE   Q+     ++L E   +A+ + D + + + VN        YT+ 
Sbjct: 332 LAWIYDITERKAAE---QQILLAAKVL-ETVTEAVVITDADNRIIFVNPAFTTITEYTKE 387

Query: 732 ELLAMTPRELDAEEFAEQVGERIRR-LREEGSLTFESAHRTRNGTVLP--VEIHAKLLDF 788
           E+    P  L +     +    + + L   G    E  +R ++G      + I+A L D 
Sbjct: 388 EVRGKNPSFLSSGRHDPEFYAGLWQVLSVSGHWAGEIWNRRKSGAFYAEWLSINA-LRDV 446

Query: 789 DGKPV-VLSIARDITDRKRLEQALMREATTDPLTGIRNRRQFFVDAEREMGRAVRYGRPL 847
            G     +++  DIT RK  E+ + R+A  D LTG+ NR  F     + + ++ R  +  
Sbjct: 447 SGAITHFVAVFSDITHRKEDEERIWRQANYDALTGLPNRSLFVDRLNQAVRQSKRDKKRF 506

Query: 848 AVLMLDLDRFKRVNDRFGHHAGDAVLMGCVQACQQALRETDILGRLGGEEFAAVLLET-D 906
           A++ LDLD FK VND  GH AGD +L        Q +R TD L RL G+EF  +L    D
Sbjct: 507 ALMFLDLDGFKAVNDTLGHAAGDVLLQQTAARLHQCMRATDTLARLAGDEFVVILEGVHD 566

Query: 907 LDD-ALAAAERLRRAVEEMDVPFSGQRLRCTVSIGLALRGPGDGALDDILRRADSALYAA 965
            D+ AL A + L    +  D+      +R ++ I L      DG    ++RRAD+A+YA 
Sbjct: 567 RDNPALVAGKILATLSKPYDLEVGTAHVRGSIGIALYPEDAADGPA--LIRRADTAMYAV 624

Query: 966 KEAGRNRVMLA 976
           K  G+N  + A
Sbjct: 625 KRRGKNSFLFA 635



 Score = 39.3 bits (90), Expect = 9e-07
 Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 6/138 (4%)

Query: 429 DITAAVSQRLALGRSEELFRGIFSTASVGI-VLLDRFGLLVRVNDACARMLGYATDEMRG 487
           DIT        L  SE     +   + VG+ V   R G +V  N     ++G + +E  G
Sbjct: 214 DITERSEAAARLAESEARLWRMLEESPVGVSVSRRRDGKVVFANSRFTDIIGMSREEFLG 273

Query: 488 QHFSRFMHDDETTLAATTLTSLLDRTQSTSRLQHRLRGKDGSYLWTDISASPLEGPNGEV 547
                   DD        + ++L R       +   R K+GS  W+ ++  PL+  N  V
Sbjct: 274 SKAREHYVDDAQR---QVVLAMLRRDGRLDDAEVEFRRKNGSPFWSLLTIHPLDFENEPV 330

Query: 548 EAALAIIVDINEQRTAQQ 565
              LA I DI E++ A+Q
Sbjct: 331 N--LAWIYDITERKAAEQ 346