Pairwise Alignments

Query, 481 a.a., DNA-directed DNA polymerase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 352 a.a., DNA polymerase IV from Pectobacterium carotovorum WPP14

 Score =  231 bits (590), Expect = 2e-65
 Identities = 134/343 (39%), Positives = 196/343 (57%), Gaps = 7/343 (2%)

Query: 4   RWIMHIDMDAFFASVEQMDDPSLRGKPVAVGGS--HRGVVSAASYEARRFGVRSALPMST 61
           R I+H+DMD F+A++E  D+P LR  P+A+GGS   RGV+S A+Y ARR+GVRSA+  +T
Sbjct: 2   RKIIHVDMDCFYAAIEMRDNPRLRDIPLAIGGSADRRGVISTANYPARRYGVRSAMATAT 61

Query: 62  ALRLCPHLIVVPGRMRRYAEISHRIMDALREFSPLVEPASVDEAYLDATGLERLFGPVEN 121
           ALRLCPHL ++PGRM  Y   S +I +    ++ L+EP S+DEAYLD T      G    
Sbjct: 62  ALRLCPHLTLLPGRMEVYKSTSRQIREIFSRYTSLIEPLSLDEAYLDVTDSPHCNGSATR 121

Query: 122 MGMAVKARVLDVTGGLTCSVGAAPVKFLAKIASDVNKPNGLFILYPEDVAEFLRTLPVGR 181
           +   ++  + D    LT S G AP+KFLAKIAS++NKPNG +++ PE V +FL TLP+ +
Sbjct: 122 IAEEIRRTIADELN-LTASAGIAPIKFLAKIASELNKPNGQYVITPEQVDDFLLTLPLEK 180

Query: 182 IPGVGKRSLDALEQLGVRFAGDVLRYSREFWERRFGKGGVHLHERASGVDPREVEPYSEP 241
           IPGVGK +   LE+ G+    DV  Y+     + FGK G  L ER  G+D R++ P    
Sbjct: 181 IPGVGKVTAKRLEERGLHTCADVRVYALADLLKEFGKFGRVLWERCQGIDERQISPDRLR 240

Query: 242 KSESAENTFSEDTADRAVLRRWLLAQAERVGASLRRQR--LAGRTITLKVKYADFRSISR 299
           KS   E T ++D  D       +    E +   L+R +  L      +K+K+ DF+  ++
Sbjct: 241 KSVGVEKTLAQDIHDWEQCENLIEQLYEELEVRLKRVKPDLHIARQGVKLKFDDFQQTTQ 300

Query: 300 SHSLPEPTASTETIFDEACRLLDALTLADKVRLIGVGVSNFGP 342
            H    P  + + +   A +       +  VRL+G+ V+   P
Sbjct: 301 EHVW--PVLNKQDLLKIAQQTWQERRKSRGVRLVGLHVTLLDP 341