Pairwise Alignments

Query, 481 a.a., DNA-directed DNA polymerase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 393 a.a., DNA polymerase IV from Magnetospirillum magneticum AMB-1

 Score =  236 bits (603), Expect = 8e-67
 Identities = 142/344 (41%), Positives = 192/344 (55%), Gaps = 1/344 (0%)

Query: 1   MAQRWIMHIDMDAFFASVEQMDDPSLRGKPVAVGG-SHRGVVSAASYEARRFGVRSALPM 59
           +A   I HID DAF+ASVE+ D+P+L  KPV VG    RGVV+ A Y AR+FG RSA+PM
Sbjct: 40  LADLTIAHIDCDAFYASVEKRDNPALADKPVIVGHPGGRGVVTTACYVARKFGPRSAMPM 99

Query: 60  STALRLCPHLIVVPGRMRRYAEISHRIMDALREFSPLVEPASVDEAYLDATGLERLFGPV 119
             AL LCPH +V+P  + +Y ++S +I     + +PLVEP S+DEAYLD +   RL    
Sbjct: 100 FKALELCPHAVVIPPNIAKYKQVSAQIRALFEKATPLVEPLSLDEAYLDLSPGVRLVDRP 159

Query: 120 ENMGMAVKARVLDVTGGLTCSVGAAPVKFLAKIASDVNKPNGLFILYPEDVAEFLRTLPV 179
             + +A  AR + +  G+T SVG +  KFLAK+ASD+NKP G  ++  E+   FL   PV
Sbjct: 160 AAVLLARLARAIRLQVGITVSVGLSYNKFLAKMASDLNKPEGFSVIGREEAEAFLAPRPV 219

Query: 180 GRIPGVGKRSLDALEQLGVRFAGDVLRYSREFWERRFGKGGVHLHERASGVDPREVEPYS 239
             + G+G  +   +   G+     +       +  R+GK G  L     G+D R V P  
Sbjct: 220 TALFGIGAATAARMADQGITTIAQLQALPETEFVARWGKFGRRLAGMVHGIDHRPVNPDR 279

Query: 240 EPKSESAENTFSEDTADRAVLRRWLLAQAERVGASLRRQRLAGRTITLKVKYADFRSISR 299
             KS S E TF+ D  D   L   L   AE V   L R  LAGRT+ LK+K ADF+ I+R
Sbjct: 280 PAKSVSTETTFARDIRDAKALTEALPPLAEGVARRLERVNLAGRTVVLKLKTADFKVITR 339

Query: 300 SHSLPEPTASTETIFDEACRLLDALTLADKVRLIGVGVSNFGPA 343
              LP+PT   ETI      LL+        RL+G+GV++  PA
Sbjct: 340 HLRLPDPTGRAETIVRAGLALLERQMDGRAFRLLGIGVTDLCPA 383