Pairwise Alignments

Query, 481 a.a., DNA-directed DNA polymerase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 351 a.a., DNA polymerase IV (NCBI) from Escherichia coli BW25113

 Score =  242 bits (618), Expect = 1e-68
 Identities = 148/357 (41%), Positives = 206/357 (57%), Gaps = 13/357 (3%)

Query: 4   RWIMHIDMDAFFASVEQMDDPSLRGKPVAVGGSH--RGVVSAASYEARRFGVRSALPMST 61
           R I+H+DMD FFA+VE  D+P+LR  P+A+GGS   RGV+S A+Y AR+FGVRSA+P   
Sbjct: 2   RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61

Query: 62  ALRLCPHLIVVPGRMRRYAEISHRIMDALREFSPLVEPASVDEAYLDATGLERLFGPVEN 121
           AL+LCPHL ++PGR   Y E S+ I +    ++  +EP S+DEAYLD T      G    
Sbjct: 62  ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121

Query: 122 MGMAVKARVLDVTGGLTCSVGAAPVKFLAKIASDVNKPNGLFILYPEDVAEFLRTLPVGR 181
           +   ++  + +    LT S G APVKFLAKIASD+NKPNG F++ P +V  FL+TLP+ +
Sbjct: 122 IAQEIRQTIFNELQ-LTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180

Query: 182 IPGVGKRSLDALEQLGVRFAGDVLRYSREFWERRFGKGGVHLHERASGVDPREVEPYSEP 241
           IPGVGK S   LE +G+R  GDV +       +RFGK G  L ER+ G+D R+V      
Sbjct: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240

Query: 242 KSESAENTFSED----TADRAVLRRWLLAQAERVGASLRRQRLAGRTITLKVKYADFRSI 297
           KS   E T +ED    +   A++ R L  + ER  A ++   L  R   +K+K+ DF+  
Sbjct: 241 KSVGVERTMAEDIHHWSECEAIIER-LYPELERRLAKVKPDLLIARQ-GVKLKFDDFQQT 298

Query: 298 SRSHSLPEPTASTETIFDEACRLLDALTLADKVRLIGVGVSNFGPAHHGPRQLTLPL 354
           ++ H  P    +   +   A +  D       VRL+G+ V+   P     RQL L L
Sbjct: 299 TQEHVWPR--LNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQME--RQLVLGL 351