Pairwise Alignments

Query, 481 a.a., DNA-directed DNA polymerase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 422 a.a., DNA polymerase IV from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  233 bits (594), Expect = 9e-66
 Identities = 133/345 (38%), Positives = 193/345 (55%), Gaps = 1/345 (0%)

Query: 6   IMHIDMDAFFASVEQMDDPSLRGKPVAVGGSHRGVVSAASYEARRFGVRSALPMSTALRL 65
           I H+D DAF+ASVE+ D P LR KPV VGG  RGVVS A Y AR++GV SA+PM  AL+ 
Sbjct: 44  IAHMDCDAFYASVEKRDRPELRDKPVIVGGGKRGVVSTACYVARQYGVGSAMPMFKALKA 103

Query: 66  CPHLIVVPGRMRRYAEISHRIMDALREFSPLVEPASVDEAYLDATGLERLFGPVENMGMA 125
           CP  +V+     +Y   S RI+ AL + +PL++P S+DEA++D +G ERL G    + + 
Sbjct: 104 CPEAVVIRPDFTKYVFESQRILGALGQLTPLIQPLSLDEAWVDLSGTERLNGGPPALQLI 163

Query: 126 VKARVLDVTGGLTCSVGAAPVKFLAKIASDVNKPNGLFILYPEDVAEFLRTLPVGRIPGV 185
              + ++   GLT S+G AP +FLAK+AS+++KP G  ++   +    L   PV  +PGV
Sbjct: 164 RFQKQIEEETGLTVSIGLAPNRFLAKMASEMDKPRGFSVVGAANAQALLAPRPVTALPGV 223

Query: 186 GKRSLDALEQLGVRFAGDVLRYSREFWERRFGKGGVHLHERASGVDPREVEPYSEPKSES 245
           G     AL   G    GD+ R       +R+G+ G+ LH+ A   D R V P  + K  S
Sbjct: 224 GPVFGKALRSDGYSTIGDLARADVRDLVKRYGESGLRLHDLAHARDARAVNPERDRKGMS 283

Query: 246 AENTFSEDTADRAVLRRWLLAQAERVGASLRRQRLAGRTITLKVKYADFRSISRSHSLPE 305
           AE TF+ED      L   L    E++ +  RR  +A R + LK++  DF+ ++R  +LP+
Sbjct: 284 AETTFNEDLTSAEALEAELWPLCEKLASKARRDGVASRVLVLKLRRTDFKIVTRRVTLPD 343

Query: 306 PTASTETIFDEACRLLDALTLADKVRLIGVGVSNFGPAHHGPRQL 350
           P  +   +F     LL    L    RLIG+G+++   A   P  L
Sbjct: 344 PVQTARALFAAGRDLLKP-ELGRPYRLIGIGMADVQDAEDAPAGL 387



 Score = 30.8 bits (68), Expect = 9e-05
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 22/65 (33%)

Query: 408 DAPDASDAPGGPDVSGRPGGHLAAAAAAIPAESIPPPDEKRRKKLDAALDALRDRHGREA 467
           D  DA DAP G                      +    E R  K + A+D LR++ G++A
Sbjct: 376 DVQDAEDAPAG----------------------LFQTSETRALKTERAIDVLREKFGKDA 413

Query: 468 VVRGR 472
           VV GR
Sbjct: 414 VVAGR 418