Pairwise Alignments

Query, 481 a.a., DNA-directed DNA polymerase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 357 a.a., DNA polymerase IV from Agrobacterium fabrum C58

 Score =  247 bits (630), Expect = 5e-70
 Identities = 143/338 (42%), Positives = 200/338 (59%), Gaps = 3/338 (0%)

Query: 4   RWIMHIDMDAFFASVEQMDDPSLRGKPVAVGGSH-RGVVSAASYEARRFGVRSALPMSTA 62
           R I+H+DMDAF+ASVEQ D+P LRG+PVAVG +  RGVV+AASYEAR FGVRSA+P  TA
Sbjct: 2   RKIIHVDMDAFYASVEQRDNPELRGRPVAVGSAAARGVVAAASYEAREFGVRSAMPSVTA 61

Query: 63  LRLCPHLIVVPGRMRRYAEISHRIMDALREFSPLVEPASVDEAYLDATGLERLFGPVENM 122
            R CP LI VP R   Y  +S +I     E++ L+EP S+DEAYLD T   +       +
Sbjct: 62  ARRCPDLIFVPPRFDVYKAVSQQIRAIFAEYTRLIEPLSLDEAYLDVTENLKGMEIATEI 121

Query: 123 GMAVKARVLDVTGGLTCSVGAAPVKFLAKIASDVNKPNGLFILYPEDVAEFLRTLPVGRI 182
              ++ R+  +TG L  S G +  KFLAK+ASD+NKPNG  ++ P++   F+  L V + 
Sbjct: 122 ASEIRERIKQITG-LNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPAFVEQLAVKKF 180

Query: 183 PGVGKRSLDALEQLGVRFAGDVLRYSREFWERRFGKGGVHLHERASGVDPREVEPYSEPK 242
            GVG  + + + + G+    D+   S +F    FGK G + +  A G+D R+V P    K
Sbjct: 181 HGVGPATAEKMHRFGIETGADLKSKSLQFLAEHFGKSGAYFYGIARGIDERQVRPDRIRK 240

Query: 243 SESAENTFSEDTADRAVLRRWLLAQAERVGASLRRQRLAGRTITLKVKYADFRSISRSHS 302
           S  AE+TFS D  D  +    L   AE+V      QR++G+T+T+KVKY+DF   +RS +
Sbjct: 241 SVGAEDTFSVDINDLDLATAELRPLAEKVWHHCEAQRVSGKTVTVKVKYSDFTQATRSRT 300

Query: 303 LPEPTASTETIFDEACRLLDAL-TLADKVRLIGVGVSN 339
              P    + I + A  LL  +      VRL+GV +S+
Sbjct: 301 SALPVNGIQEILEAASALLATVYPFRRSVRLLGVTLSS 338