Pairwise Alignments

Query, 481 a.a., DNA-directed DNA polymerase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 405 a.a., DNA polymerase IV from Agrobacterium fabrum C58

 Score =  231 bits (590), Expect = 3e-65
 Identities = 136/338 (40%), Positives = 187/338 (55%)

Query: 6   IMHIDMDAFFASVEQMDDPSLRGKPVAVGGSHRGVVSAASYEARRFGVRSALPMSTALRL 65
           I HID DAF+ASVE+ D+P L  KPV VGG  RGVVS A Y AR  GVRSA+PM  AL  
Sbjct: 23  IAHIDCDAFYASVEKRDNPELADKPVIVGGGKRGVVSTACYIARIHGVRSAMPMFKALEA 82

Query: 66  CPHLIVVPGRMRRYAEISHRIMDALREFSPLVEPASVDEAYLDATGLERLFGPVENMGMA 125
           CP  +V+   M +Y+ +   I   ++E +PLV+P S+DEA+LD +G E+L        +A
Sbjct: 83  CPDAVVIKPDMEKYSRVGREIRTMMQELTPLVQPLSIDEAFLDLSGTEKLHHDPPARVLA 142

Query: 126 VKARVLDVTGGLTCSVGAAPVKFLAKIASDVNKPNGLFILYPEDVAEFLRTLPVGRIPGV 185
                ++   G++ S G +  KFLAK+ASD+ KP G  ++   +   FL   PV  I GV
Sbjct: 143 KFTGRVEKEVGVSVSAGLSYCKFLAKVASDLQKPRGFSVVGEAEALSFLAARPVTTIWGV 202

Query: 186 GKRSLDALEQLGVRFAGDVLRYSREFWERRFGKGGVHLHERASGVDPREVEPYSEPKSES 245
           GK     LE  G+R    +         RR+G  G  L   A G+D R V      KS S
Sbjct: 203 GKAFAATLEADGIRMIAQLQEMEESELMRRYGVMGQRLFRLARGIDERHVHNNDPVKSVS 262

Query: 246 AENTFSEDTADRAVLRRWLLAQAERVGASLRRQRLAGRTITLKVKYADFRSISRSHSLPE 305
           +E TF  D +    L   L + +E+V   L++  +AG+T+ LK+K ADF+S +R+  L +
Sbjct: 263 SETTFFHDISRHEDLVPILRSLSEKVAWRLKKSGIAGQTVVLKMKTADFKSRTRNRRLDD 322

Query: 306 PTASTETIFDEACRLLDALTLADKVRLIGVGVSNFGPA 343
           PT   + IF     LL+  T   K RLIG+GVS+   A
Sbjct: 323 PTQLADRIFRTGLALLEKETDGTKFRLIGIGVSDLRDA 360



 Score = 27.3 bits (59), Expect = 0.001
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 5/37 (13%)

Query: 443 PPD-----EKRRKKLDAALDALRDRHGREAVVRGRLF 474
           PPD       RR   +AA+D LRD+ G+ +V  G  F
Sbjct: 365 PPDLVDRQATRRAAAEAAMDKLRDKFGKGSVETGYTF 401