Pairwise Alignments

Query, 936 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 1510 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  392 bits (1007), Expect = e-113
 Identities = 218/566 (38%), Positives = 325/566 (57%), Gaps = 4/566 (0%)

Query: 374  ANAKLHLMGEVFTHAVEGIFITDSAGTVVAVNPAFERITGVDAQSMVGRLSPAL--GMVP 431
            A  +L L  +VF  A E I ITDS+G ++ VN +F RITG   Q ++G+    L  G   
Sbjct: 946  AEEQLRLAAKVFDRAGEAITITDSSGNIITVNDSFCRITGYSHQEVIGKNPRFLQSGKHG 1005

Query: 432  VNGTRSVWDEMLEHGSWIGETRGPHRDGWQIPQWLSLVSIRDETGVILNCVGVFSDITDI 491
             +   ++W  ++E G W GE     ++G   P+WL++ S+RDE G ++N V +FSDI+ I
Sbjct: 1006 KDFYDAMWRSLIEQGCWQGEIFNRRKNGEIYPEWLTVNSVRDENGSVVNYVAIFSDISAI 1065

Query: 492  KQKEAQITHQANHDDLTGLPNRKHIFELLHDAIARASVRGQKLAVVFIDMDGFKFINDSY 551
            K  + +I   A HD+LTG+PNR  + + L  A+A+A  +  KLAV+FID+D FK INDS 
Sbjct: 1066 KSSQRRIEFLATHDELTGIPNRSLLMDRLKHAVAQAKRQKTKLAVLFIDLDNFKVINDSL 1125

Query: 552  DHATGDQLLCDVARRLRAALRPGDMLGRLGGDEFVAAVGGISDKGHLDGIMRRLFETFAE 611
             H  GDQLL     RL+  +R  D L RLGGDEFVA +  +S +  ++ +  R+ +    
Sbjct: 1126 GHDVGDQLLKQATERLKHCVRDSDTLARLGGDEFVAVLTDVSLE-KVNSVAARIVDFLGA 1184

Query: 612  PFEYGGMGFSVTASFGVSVYPDDGDSANALLSRADIAMYRAKDMGKNAIAVFCEEQCLEF 671
             F        V+AS G+SV+PDDG  +  LL  AD AMYRAK+ G+N    F +E  +  
Sbjct: 1185 SFSINDKSLFVSASIGISVFPDDGQDSLTLLKHADTAMYRAKERGRNQYQFFADEMKVIA 1244

Query: 672  TRRYRMDQEIKAAIAGREFRLVYQPIADARTLRVRKVEALLRWERDGAVVAPPSVFIPVA 731
             +R  ++  ++ A+  + FR+ YQP  D  T  V   EALLRW         P+ FIP+A
Sbjct: 1245 LQRLTLETGLRLALETKSFRMCYQPQVDIHTGEVVGAEALLRWRDPTLGEVSPAHFIPIA 1304

Query: 732  ESSNAIREITRLVVEMACVQHAAWRLEGLTLP-VAVNISSRCLNSDETISHIAACLNAYD 790
            ES   I  I   V  M   Q A WR +GLT+P +A+N+S+  L      + + + L++  
Sbjct: 1305 ESCGLIGAIGETVFTMVLEQIAYWREKGLTVPRIAINVSAHQLRDAGFAAKVGSWLDSSG 1364

Query: 791  VPPDALEVEITETSLMQNYERGNAMLCTLRDLGVRVSLDDFGTGYSSLQYLARMPIHALK 850
            +  + + +E+TE++LM+  +    ML +   +G++VS+DDFGTGYSSL YL ++PIH LK
Sbjct: 1365 ISSELIGIELTESALMERIDMVKEMLTSFDGMGMKVSIDDFGTGYSSLSYLKKLPIHELK 1424

Query: 851  IDRTFVQELLEEGGSLEIVETILGLARSLRLATVAEGVETAAQLSALRGMGVDYLQGYCL 910
            IDR+FV  +  E     I + I+ ++R+L +  VAEGVE+  QL  L+  G D +QGY  
Sbjct: 1425 IDRSFVDGIALERDDRSIAKAIIDMSRALGMRVVAEGVESEEQLGVLKEEGCDMVQGYLF 1484

Query: 911  GRPLPADDILTLCRRGMRLVPRDVER 936
             RPL  +    +   G +   + ++R
Sbjct: 1485 HRPLSPEAFAKVIETGGKSSRKPLKR 1510



 Score = 30.8 bits (68), Expect = 7e-04
 Identities = 11/44 (25%), Positives = 23/44 (52%)

Query: 384 VFTHAVEGIFITDSAGTVVAVNPAFERITGVDAQSMVGRLSPAL 427
           +  H+   + + D+AG    +N  FE + G+ A+ ++G+    L
Sbjct: 835 IMNHSTSAVSLKDAAGRYEFINMRFEELFGLSAEEVIGKTDQQL 878