Pairwise Alignments

Query, 936 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 703 a.a., GGDEF domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  371 bits (953), Expect = e-107
 Identities = 224/562 (39%), Positives = 309/562 (54%), Gaps = 8/562 (1%)

Query: 361 ERRVRDRTAQLCDANAKLHLMGEVFTHAVEGIFITDSAGTVVAVNPAFERITGVDAQSMV 420
           E  V++ TA+   A   L L   VF    E I +TD    ++AVN AFER+TG +A  MV
Sbjct: 128 EGTVQNITARK-QAEESLRLAATVFETVGEAIVVTDRERRILAVNAAFERMTGWNAAEMV 186

Query: 421 GRLSPALG--MVPVNGTRSVWDEMLEHGSWIGETRGPHRDGWQIPQWLSLVSI---RDET 475
           G+    L   M+ +     +W      G W GET    ++    P  L+L ++    D  
Sbjct: 187 GQTCDLLAVEMIGLREIEEMWRLAANTGQWSGETWTRRKESEPFPAALALTAVDQGADAK 246

Query: 476 GVILNCVGVFSDITDIKQKEAQITHQANHDDLTGLPNRKHIFELLHDAIARASVRGQKLA 535
           G     V +  DIT  ++ E +I   A+HD LT LPNR  + E L +AI RA   G++LA
Sbjct: 247 GEDGRFVLLLRDITRKRRDEQRIRFHASHDALTRLPNRHTVMEALGEAIVRAEQTGERLA 306

Query: 536 VVFIDMDGFKFINDSYDHATGDQLLCDVARRLRAALRPGDMLGRLGGDEFVAAVGGISDK 595
           V+++D++ FK INDSY HA GD+LL  VARRL+A +R  D++GRLGGDEFV  +  + D 
Sbjct: 307 VLYLDVNRFKDINDSYGHAVGDELLRQVARRLKACVRASDVIGRLGGDEFVMLLPSVGDH 366

Query: 596 GHLDGIMRRLFETFAEPFEYGGMGFSVTASFGVSVYPDDGDSANALLSRADIAMYRAKDM 655
                   ++   FAEPF+  G+      S G+++YPDD D A +LLSRAD AMY AK  
Sbjct: 367 TAAQACANKVLYAFAEPFDMEGLQLFAGTSIGIALYPDDADGAESLLSRADAAMYHAK-R 425

Query: 656 GKNAIAVFCEEQCLEFTRRYRMDQEIKAAIAGREFRLVYQPIADARTLRVRKVEALLRWE 715
           G    + F  E   +   R  ++ +++ A+   +FRLVYQP  DA +  +   EAL+RW 
Sbjct: 426 GGLPYSCFDIEMDRQVAERVSLENDLRLALGEDQFRLVYQPKVDALSGAIIGAEALIRWR 485

Query: 716 RDGAVVAPPSVFIPVAESSNAIREITRLVVEMACVQHAAWRLEGLTLP-VAVNISSRCLN 774
                   P +FIPVAE +  I  I   V+  AC Q A WR +GL LP ++VN+S    +
Sbjct: 486 HPVRADVSPGLFIPVAERAGLIGAIDDWVLVEACRQVAEWRAQGLILPSISVNLSPAQFH 545

Query: 775 SDETISHIAACLNAYDVPPDALEVEITETSLMQNYERGNAMLCTLRDLGVRVSLDDFGTG 834
                  + A L    +PP  LE+EITET +  + +R   +L  L  LGVRVSLDDFGTG
Sbjct: 546 DGRLKEKVKAALAGSGLPPSVLELEITETMMASDVDRAIEILGQLTTLGVRVSLDDFGTG 605

Query: 835 YSSLQYLARMPIHALKIDRTFVQELLEEGGSLEIVETILGLARSLRLATVAEGVETAAQL 894
           YSSL YL   P+  LKIDR FV EL        I+ +++ LA +L  + +AEGVET  Q 
Sbjct: 606 YSSLAYLKLFPVSTLKIDRAFVTELPGNAKDGAIIASVIALAGNLGFSVIAEGVETREQA 665

Query: 895 SALRGMGVDYLQGYCLGRPLPA 916
           + L   G   +QG+   RP+ A
Sbjct: 666 AFLAARGCPIMQGFLFSRPVNA 687



 Score = 33.1 bits (74), Expect = 6e-05
 Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 14/182 (7%)

Query: 384 VFTHAVEGIFITDSAGTVVAVNPAFERITGV--DAQSMVGRLSPALGMVPVNGTRSVWDE 441
           +F +AVEGI+ T   G  +  NPA  RI G    A+ + G    A G+      R  + E
Sbjct: 26  LFENAVEGIYRTTPDGRYLDANPALARIYGYKDPAELIAGLTDIARGLYVDPADRERFRE 85

Query: 442 MLEHGSWIG--ETRGPHRDGWQIPQWLSLVSIRDETGVILNCVGVFSDITDIKQKEAQIT 499
           +L   S +   E R   R G  I    +  ++ D    ++   G   +IT  KQ E  + 
Sbjct: 86  ILARDSVVRNFEARVRTRSGEIIWIAENARAVYDGRDRLVCYEGTVQNITARKQAEESLR 145

Query: 500 HQANHDDLTG----LPNRKHIFELLHDAIAR------ASVRGQKLAVVFIDMDGFKFIND 549
             A   +  G    + +R+     ++ A  R      A + GQ   ++ ++M G + I +
Sbjct: 146 LAATVFETVGEAIVVTDRERRILAVNAAFERMTGWNAAEMVGQTCDLLAVEMIGLREIEE 205

Query: 550 SY 551
            +
Sbjct: 206 MW 207