Pairwise Alignments

Query, 936 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 831 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  365 bits (938), Expect = e-105
 Identities = 207/557 (37%), Positives = 298/557 (53%), Gaps = 7/557 (1%)

Query: 361 ERRVRDRTAQLCDANAKLHLMGEVFTHAVEGIFITDSAGTVVAVNPAFERITGVDAQSMV 420
           +RRV + + Q+     +L L   VF +A EG+F TD+A  ++AVNPAF  ITG  A+  +
Sbjct: 18  QRRVEELSQQV----ERLSLYQAVFDNAFEGMFATDAANRIIAVNPAFTAITGYAAEEAI 73

Query: 421 GRLSPAL--GMVPVNGTRSVWDEMLEHGSWIGETRGPHRDGWQIPQWLSLVSIRDETGVI 478
           G     L  G       + +WD++   G W GE    H+DG  +  WLS+ S R   G +
Sbjct: 74  GNDPRMLSSGFHDPAFYQEMWDQLSTTGQWQGEVVDRHKDGRPVRLWLSITSQRGADGKV 133

Query: 479 LNCVGVFSDITDIKQKEAQITHQANHDDLTGLPNRKHIFELLHDAIARASVRGQKLAVVF 538
              + VF D+T+ ++   Q+  ++N D LT LPNR    + L  A+  A   G K+A++F
Sbjct: 134 ARRIAVFRDVTEARETAEQLWQRSNFDPLTELPNRNLFLDRLLQALVLAGREGSKVAMLF 193

Query: 539 IDMDGFKFINDSYDHATGDQLLCDVARRLRAALRPGDMLGRLGGDEFVAAVGGISDKGHL 598
           I +DGFK INDS  H  GD++L + ARR +  LR GD   R GGDEF   + G+     +
Sbjct: 194 IGLDGFKNINDSLGHWIGDKVLQEAARRFQNCLRQGDTAARFGGDEFTVVLSGVRATAEV 253

Query: 599 DGIMRRLFETFAEPFEYGGMGFSVTASFGVSVYPDDGDSANALLSRADIAMYRAKDMGKN 658
           + ++R + E   EPF        ++ S GV ++P DG+  ++L+  A  A+ +AK  G+N
Sbjct: 254 EAVIRSVLEVLQEPFVVEHHHILISCSIGVCMWPGDGEDVDSLMRNATAALQQAKQAGRN 313

Query: 659 AIAVFCEEQCLEFTRRYRMDQEIKAAIAGREFRLVYQPIADARTLRVRKVEALLRWERDG 718
               F          R R+  E+  A++  EF LV+QP+ D ++ +V   EALLRW    
Sbjct: 314 TFRFFTPAMDARAQARSRLADELSGALSQGEFHLVFQPLVDVKSGKVNAAEALLRWHNRY 373

Query: 719 AVVAPPSVFIPVAESSNAIREITRLVVEMACVQHAAWRLEGL-TLPVAVNISSRCLNSDE 777
             V  P  F+P+AE    IR I   ++  AC +   W+  GL  + +AVNIS R     +
Sbjct: 374 LGVVSPDQFVPLAEEIGLIRPIGEWLLTAACREALVWQGMGLGEINIAVNISPRQFQQGD 433

Query: 778 TISHIAACLNAYDVPPDALEVEITETSLMQNYERGNAMLCTLRDLGVRVSLDDFGTGYSS 837
            +  I   L    +PP  L +EITE  L+ N E   A +  +R LGV +S+DDFGTGYSS
Sbjct: 434 IVGIIRRALEDTRLPPWLLTIEITEGLLLSNGEEILAKMEAIRTLGVSLSVDDFGTGYSS 493

Query: 838 LQYLARMPIHALKIDRTFVQELLEEGGSLEIVETILGLARSLRLATVAEGVETAAQLSAL 897
           L YL   P+  LKIDR+F+ ++ +      +VE I+ L  SL L  VAEGVET  QL  +
Sbjct: 494 LSYLKSFPVDVLKIDRSFIADMGDHSDDATMVEAIIALGHSLHLEVVAEGVETKQQLDFI 553

Query: 898 RGMGVDYLQGYCLGRPL 914
              G D  QGY    PL
Sbjct: 554 TAQGCDVAQGYYFSPPL 570