Pairwise Alignments

Query, 812 a.a., DNA gyrase, A subunit (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 895 a.a., DNA gyrase subunit A from Magnetospirillum magneticum AMB-1

 Score =  746 bits (1925), Expect = 0.0
 Identities = 398/852 (46%), Positives = 561/852 (65%), Gaps = 55/852 (6%)

Query: 5   VSIEKELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQHELGNGYTRPPKKSARVV 64
           V+IE E+++SYL+Y++SVI+ RA+PD RDGLKPVHRRI+FA +E G  + +P +KSAR+V
Sbjct: 15  VTIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMNEAGYHFNKPFRKSARIV 74

Query: 65  GDVIGKYHPHGDSAVYDALVRMAQDFSMRDPLVDGQGNFGSIDGDAAAAMRYTEVRMSRL 124
           GDV+GKYHPHGDSA+YDA+VRMAQ+FSMR PLVDGQGNFGS+DGD  AAMRYTE R++R 
Sbjct: 75  GDVMGKYHPHGDSAIYDAMVRMAQNFSMRLPLVDGQGNFGSMDGDPPAAMRYTEARLARS 134

Query: 125 AGEFLADIDKETVDFRPNYDNTLLEPSVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 184
           A   L DIDKETVDF+ NYD +  EP VLP + PNLL+NG+ GIAVGMATNIPPHNLGE+
Sbjct: 135 AHSLLEDIDKETVDFQANYDESTHEPMVLPARYPNLLVNGAGGIAVGMATNIPPHNLGEV 194

Query: 185 CGALLHIVDEPGCTVEDLMDHVKGPDFPTAGFVYAGQGLYDAYTTGRGTVKVRGKVEIEE 244
             A    +D+P  TVE LM+ V GPDFPT G +    G+  A  TGRG+V +RG+V IEE
Sbjct: 195 IDACCAYIDDPEVTVERLMELVPGPDFPTGGTILGRAGIRAAQLTGRGSVVMRGRVHIEE 254

Query: 245 RKKGLQAIVIREIPFALNKSSLVEKIAALVNERKIDGVADLRDESDRKGIRVVIDLKRGT 304
            +K  +AIV+ EIP+ +NK+ ++E+IA LV ++KI+G++DLRDESDR G+R+V+++KR  
Sbjct: 255 VRKDREAIVVTEIPYQVNKARMLEQIAELVRDKKIEGISDLRDESDRDGVRMVVEIKRDA 314

Query: 305 IPDIVVNALYKYTPLESSFGINMLAVVGNRPQLLNLKQALEIFLEHRREVIIRRTRYDLR 364
           I ++V+  LY++TPL++SFG+N LA+ G RP+++ L+  +  F+  R EVI RRT ++L 
Sbjct: 315 IAEVVLAQLYRFTPLQTSFGVNSLALNGGRPEMMTLRDIIVAFIAFREEVITRRTIFELG 374

Query: 365 KAEARAHILEGLRIALDNIDEVVALIRASKTPQDAKDALM-------------------- 404
           KA  RAH+L GL IA+ NIDEV+ LIRA+  P +A++ LM                    
Sbjct: 375 KARDRAHVLAGLAIAVANIDEVIRLIRAAPDPGEAREKLMTRAWPVGDVEPLIRLIDEPG 434

Query: 405 -----GRFTLSEAQAQAILDMRLQRLTNLEHEKLIEEYNELLKKIEFFRSVLENPEVLRS 459
                G + LSE QA+AILD+RL RLT LE +K+ +E  E+  +IE +  +L +   L  
Sbjct: 435 RAIEDGCYRLSEVQAKAILDLRLHRLTGLERDKIGDELREIGHQIEAYLLILSSRPRLME 494

Query: 460 VIREEIGELRDTFATKRRTEVLEEELDGIDIEDLIPDEDVVITLSRRGYIKRTTLDNYQQ 519
           V+R E+ E+R+ FAT RRT + E E +  DIEDLI  ED+V+T++  GYIKR  L  Y+ 
Sbjct: 495 VMRGELMEIREQFATPRRTTIEENEFEA-DIEDLIAREDMVVTVTNTGYIKRVPLSAYRA 553

Query: 520 QRRGGKGIAGVHTSEDDFVQDFLTTTNHQYLLLFTNHGRMHQIKVHRVPEGSRTAKGVHI 579
           Q+RGGKG +G++  ++DF+        H  +L F++ G  +++KV+R+P G+  A+G  +
Sbjct: 554 QKRGGKGRSGMNIKDEDFLTQVFVVNTHTPVLFFSSTGIAYKLKVYRLPLGNPQARGKAM 613

Query: 580 ANLVQLDKDELVTNVLTVREFAE---DRYFLFVTRRGMVKRSSASLYAKCRKTGLIAVGL 636
            NL+ LD  E ++ ++ + E      D + +FVT +G V+R+  S + + R  G IA+ L
Sbjct: 614 VNLLPLDDGETISTIMPLPEDETTWGDLHVMFVTSKGDVRRNPLSDFTEVRANGKIAMKL 673

Query: 637 RPDDELIMVREVD-EHCHIVLTTGDGMAIRFQCEDVRPM-GRSATGVKGIALRGKDRVVA 694
              + LI V+    E   ++L T  G AIRF  +DVR    R +TGV+GI L G+D V++
Sbjct: 674 GEGERLISVQTCSAESDDVLLATHRGKAIRFPVQDVREFKSRDSTGVRGIRLDGEDEVIS 733

Query: 695 CVILAEEDTTS------------------------MIMSVSANGFGKRTKADLYRVQSRG 730
             IL   D  S                         I++V+ NGFGKRT A  YR+  RG
Sbjct: 734 MSILRHTDYDSETRDAFLKGDLPADQMDKMVAEQQFILTVTENGFGKRTSAFEYRITGRG 793

Query: 731 GVGVKNFKVTPKTGDVIGAMPVRDDDALVLLTSTNKILRMGLNDVRSVGRATQGVRLVRL 790
           G G+ N  +T KTG V+ + PV  +D ++L++   K++RM ++D+R  GR TQGV L+R 
Sbjct: 794 GSGIANLDMTAKTGLVVASFPVNHEDDIMLVSDGGKLIRMPVDDIRIAGRKTQGVTLLRT 853

Query: 791 DEGALVVGFDRI 802
            E   VV   R+
Sbjct: 854 AENERVVSAARL 865



 Score = 44.3 bits (103), Expect = 3e-08
 Identities = 59/251 (23%), Positives = 104/251 (41%), Gaps = 40/251 (15%)

Query: 486 DGIDIEDLIP---DEDV-----VITLSRRGYIKRTTLDNYQQQRRGGKGIAGVHTSEDDF 537
           DG  I  ++P   DE       V+ ++ +G ++R  L ++ + R  GK IA      +  
Sbjct: 621 DGETISTIMPLPEDETTWGDLHVMFVTSKGDVRRNPLSDFTEVRANGK-IAMKLGEGERL 679

Query: 538 VQDFLTTTNHQYLLLFTNHGRMHQIKVHRVPE-GSRTAKGVHIANLVQLDKDELVTNVLT 596
           +     +     +LL T+ G+  +  V  V E  SR + GV     ++LD ++ V ++  
Sbjct: 680 ISVQTCSAESDDVLLATHRGKAIRFPVQDVREFKSRDSTGVRG---IRLDGEDEVISMSI 736

Query: 597 VRE------------------------FAEDRYFLFVTRRGMVKRSSASLYAKCRK--TG 630
           +R                          AE ++ L VT  G  KR+SA  Y    +  +G
Sbjct: 737 LRHTDYDSETRDAFLKGDLPADQMDKMVAEQQFILTVTENGFGKRTSAFEYRITGRGGSG 796

Query: 631 LIAVGLRPDDELIMVR-EVDEHCHIVLTTGDGMAIRFQCEDVRPMGRSATGVKGIALRGK 689
           +  + +     L++    V+    I+L +  G  IR   +D+R  GR   GV  +     
Sbjct: 797 IANLDMTAKTGLVVASFPVNHEDDIMLVSDGGKLIRMPVDDIRIAGRKTQGVTLLRTAEN 856

Query: 690 DRVVACVILAE 700
           +RVV+   L +
Sbjct: 857 ERVVSAARLCD 867