Pairwise Alignments

Query, 315 a.a., shikimate 5-dehydrogenase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 273 a.a., Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  109 bits (272), Expect = 8e-29
 Identities = 85/272 (31%), Positives = 120/272 (44%), Gaps = 24/272 (8%)

Query: 12  YGIIGHPLGHTMSPLLHNWGFSLLDVPAVYMAWPLEPGRVGDFITAVRTLPIRGASVTIP 71
           Y ++GHP+GH+ SP +H            Y A         + +   R    RG +V++P
Sbjct: 5   YAVLGHPIGHSKSPWIHTEFARSTGQDLGYTAIETPLDGFSETVLGFRAGGGRGLNVSLP 64

Query: 72  HKQAVLPLLDGVSDRARAVGAVNTLYWRDGQLLGENTDVTGFLAPLRQRAAAGWRCERAL 131
            K     +    S+RAR  GA N L +   ++L +N D  G +  L+Q      + +R L
Sbjct: 65  FKLQAFEIATEPSERARLAGAANCLKFEGERILADNFDGVGLVNDLQQNLGVPLKGKRVL 124

Query: 132 VLGNGGAARAVLAGLRELGPAGDGVVRAVGVTGRNAEKAAPLAAEFGAEVV----DWDAR 187
           +LG GGA R  L  +    PA       + V  R  EKA  L  +F A V      ++  
Sbjct: 125 LLGAGGATRGALLPIAAEQPA------LLAVANRTPEKAHGLRHDFAAHVPLQTGGYETL 178

Query: 188 VHWGADLVVNTTPMGMSGERQGDTAFPEQGFAAQGVAAGGDGRRGLAYDLVYNPLRTRFL 247
           +    D+V+N T  G+S E    T     G  A G          LAYD+VY    T FL
Sbjct: 179 LGHRFDVVINATSTGLSQE----TLPLPDGLFAPG---------ALAYDMVYGKGLTPFL 225

Query: 248 SEAADAGWD-TQDGLGMFVEQGREQFRLWTGL 278
            +A  AG +   DG+GM VEQ  E F  W G+
Sbjct: 226 RQAKAAGVERVADGVGMLVEQAAEAFLWWRGV 257