Pairwise Alignments

Query, 315 a.a., shikimate 5-dehydrogenase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 282 a.a., shikimate 5-dehydrogenase from Agrobacterium fabrum C58

 Score =  109 bits (273), Expect = 7e-29
 Identities = 88/285 (30%), Positives = 132/285 (46%), Gaps = 23/285 (8%)

Query: 4   HPFLPRELYGIIGHPLGHTMSPLLHNWGFSLLDVPAVYMAWPLEPGRVGDFITAVRTLPI 63
           H FL  E+ G    P G   +  +    +    +   Y+   + P  + D +   R +  
Sbjct: 3   HDFLA-EITGSFAMPAGENPTVAMIEAAYQHHGLNWRYINLEVSPENLKDAVAGARAMGW 61

Query: 64  RGASVTIPHKQAVLPLLDGVSDRARAVGAVNTLYWRDGQLLGENTDVTGFLAPLRQRAAA 123
            G + +IPHK AV+  LDG+ + A  +GAVNT+  R  +L+GENTD  GF+  LR     
Sbjct: 62  AGFNCSIPHKVAVIQHLDGLGESAEIIGAVNTIVRRGDRLIGENTDGKGFVKALRD--VI 119

Query: 124 GWRCERALVLGNGGAARAVLAGLRELGPAGDGVV---RAVGVT-GRNAEKAAPLAAEFGA 179
             + ++ ++ G GGAARAV   +   G A   VV   R  G T  R  ++  P  A F A
Sbjct: 120 DPKDKKVVLFGAGGAARAVCVEVALAGAAHITVVNRNRERGETVARLIDEKTPATATFAA 179

Query: 180 EVVDWD--ARVHWGADLVVNTTPMGMSGERQGDTAFPEQGFAAQGVAAGGDGRRGLAYDL 237
               W+    +    D+V++ T +G+  +  G      +      V A G          
Sbjct: 180 ----WEDAFAIPEETDIVIHATSVGLYPDIDGLPDIDLKTLRPSMVVADG---------- 225

Query: 238 VYNPLRTRFLSEAADAGWDTQDGLGMFVEQGREQFRLWTGLELPA 282
           ++NP RTR +  A  AG  T DGLGM V QG    + WTG+++ A
Sbjct: 226 IHNPPRTRLIRAAEAAGSKTADGLGMLVNQGVIGIKYWTGVDVDA 270