Pairwise Alignments

Query, 521 a.a., PAS modulated sigma54 specific transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 670 a.a., putative 2-component regulator, interaction with sigma 54 (VIMSS) from Escherichia coli BW25113

 Score =  253 bits (647), Expect = 1e-71
 Identities = 130/272 (47%), Positives = 187/272 (68%), Gaps = 2/272 (0%)

Query: 114 AVETITDISAVVEKDRRIEELSRLLGSDEGFAGMVGTSPAMQRVFKIIERAAESDAPVLV 173
           A  ++TD+   ++++    +LS  L S+ G   ++  S AM+ + + ++  A+SD+ VL+
Sbjct: 316 AWRSMTDLQESLQQENH--QLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLI 373

Query: 174 LGASGTGKELAARAIHELGRRKNGAYVQLNCAALNEALLESELFGHVRGAFTGAIRDRQG 233
            G +GTGKE+ ARAIH+L  R++   V++NCAA+  +LLESELFGH +GAFTGAI   +G
Sbjct: 374 CGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRG 433

Query: 234 RFEAAHGGDIFLDEIGDIPLPIQVKLLRVLETKRIERVGDNASREVDVRIIAATNRDLGR 293
           RFE A GG +FLDEIGD+PL +Q KLLRVL+ + IER+G + +  V+VR+IAATNRDL +
Sbjct: 434 RFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQ 493

Query: 294 LVRAGRFREDLLFRINVIPIHLPPLADRREDIPLLAAHFLKGIRERDGRDVTGLTPEALR 353
           +V   +FR DL +R+NV P+ LPPL DR EDIPLLA HF + +     R +  +  EALR
Sbjct: 494 MVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALR 553

Query: 354 LLTAYGWPGNVRELRSALEYACVIAEGGRLGV 385
            L ++ WPGNVREL + +E A ++  G  L +
Sbjct: 554 QLMSWDWPGNVRELENVIERAVLLTRGNSLNL 585



 Score = 35.0 bits (79), Expect = 9e-06
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 469 PARHERERAELVEALRAAGGNVSE---AARLLGVHRGTVRNRMLRFGIDVHKAV 519
           P   E ER  +V+ LR   G V+    AA  LG+ R T+ +RM R GI V + +
Sbjct: 617 PENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670