Pairwise Alignments

Query, 521 a.a., PAS modulated sigma54 specific transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 690 a.a., Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains from Enterobacter asburiae PDN3

 Score =  248 bits (634), Expect = 4e-70
 Identities = 131/261 (50%), Positives = 170/261 (65%), Gaps = 4/261 (1%)

Query: 127 KDRRIEE----LSRLLGSDEGFAGMVGTSPAMQRVFKIIERAAESDAPVLVLGASGTGKE 182
           K+R ++E      +L   D  F  ++G S AM  V K +E  A+SD+ VL+LG +GTGKE
Sbjct: 357 KERLVDENLALTEQLNNVDSEFGEIIGRSDAMYSVLKQVEMVAQSDSTVLILGETGTGKE 416

Query: 183 LAARAIHELGRRKNGAYVQLNCAALNEALLESELFGHVRGAFTGAIRDRQGRFEAAHGGD 242
           L ARAIH L  R +   V++NCAA+   LLES+LFGH RGAFTGA   R GRFE A    
Sbjct: 417 LIARAIHNLSNRNSRRMVKMNCAAMPAGLLESDLFGHERGAFTGASSQRLGRFELADKSS 476

Query: 243 IFLDEIGDIPLPIQVKLLRVLETKRIERVGDNASREVDVRIIAATNRDLGRLVRAGRFRE 302
           +FLDE+GD+PL +Q KLLRVL+ +  ER+G N   + DVR+IAATNRDL ++V    FR 
Sbjct: 477 LFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKLIQTDVRLIAATNRDLKKMVADREFRS 536

Query: 303 DLLFRINVIPIHLPPLADRREDIPLLAAHFLKGIRERDGRDVTGLTPEALRLLTAYGWPG 362
           DL +R+NV PI LPPL +R EDIPLL   F   I  R GR++  +  E LR L++  WPG
Sbjct: 537 DLYYRLNVFPIFLPPLRERPEDIPLLVKAFTAKIARRMGRNIDSIPAETLRTLSSMEWPG 596

Query: 363 NVRELRSALEYACVIAEGGRL 383
           NVREL + +E A ++  G  L
Sbjct: 597 NVRELENVIERAVLLTRGNVL 617



 Score = 26.2 bits (56), Expect = 0.004
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 473 ERERAELVEALRAAGGNVSE---AARLLGVHRGTVRNRMLRFGID 514
           E E   ++  L+   G V+    AA+ LG+ R T+ +RM R GID
Sbjct: 641 EDEYQLIMRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 685