Pairwise Alignments

Query, 405 a.a., Extracellular ligand-binding receptor (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 409 a.a., ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  133 bits (334), Expect = 1e-35
 Identities = 108/376 (28%), Positives = 173/376 (46%), Gaps = 20/376 (5%)

Query: 34  AQAADPVKIGAFFALSGPTAPVGTPTKLVAQMFVDKVNKEGGINGRPIELVLGDTEGDPT 93
           A AADP+KIG     +G ++ +G   +   ++  +++NK GG+ GR I+L+  D E    
Sbjct: 20  ALAADPIKIGVDGPFTGGSSSMGVSMRDGVRLAAEEINKSGGVLGRQIQLIERDDEAKNE 79

Query: 94  KAVLTFKRFVSEEKVVAVIGPTRTDEGMAVKRQIESSGIPTVMTVGGDPVIMEGKLGNMD 153
           + V   + FV++EKVVA +G   T   +A +R  + + IP +  V    VI        D
Sbjct: 80  RGVQIAQEFVNKEKVVAAVGYINTGVALASQRFFQDAKIPVLNNVATGSVITH----QFD 135

Query: 154 FGTARSVFKSPQRSSTAVRKVL-GYLKKHELTKVALLLSGDNFGQDGERWLRSLAPEYGI 212
                 VF++    S     ++   + +    KVA+L    N+GQ G   L       GI
Sbjct: 136 KDPENYVFRNAAHDSIQAPMIVEEAITRRGYKKVAILADSTNYGQLGREDLERALKNKGI 195

Query: 213 EIVGTEQFKPTDVDMKTQLTALAGKGPQAVICWTIGPAGALVSKNHHALGLTMPLLQCHG 272
             V  E+F   DVDM  QL      G +AV+ + IGP  A ++     LG  +P++    
Sbjct: 196 TPVAVEKFNIKDVDMTAQLLKSKEAGAEAVLTYGIGPELAQIANGMTKLGWKVPIIGSWT 255

Query: 273 LPDPAYIKLAGEASEGDLMPATKLMTWEALPDGDPQKKVIAEFVRLYRDEYKYDAQYPLN 332
           L    +I  AG   +G  MP T +      P    +K  I  FV  ++ +       P++
Sbjct: 256 LAMANFIDNAGPGGDGARMPQTFIQE----PTNPKRKAFIDAFVGKFKPK-NNRMDSPVS 310

Query: 333 THSGYAWDALLLLVEAMRKVG-TEPARVRDALEATRGLVGVSGVFT-----LGPQDHNGL 386
              GY  D++ LL  A+++ G T+  +++ ALE  +    V GV T         DH+ +
Sbjct: 311 AAQGY--DSIYLLAAAIKQAGSTDGPKIKAALEDLQ--APVEGVVTTYNKPFTKTDHDAI 366

Query: 387 GEDSMVMLQVRGGRFV 402
             +  V  +V+GGR V
Sbjct: 367 TANIPVFGEVKGGRVV 382