Pairwise Alignments

Query, 405 a.a., Extracellular ligand-binding receptor (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 388 a.a., ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  134 bits (337), Expect = 5e-36
 Identities = 109/399 (27%), Positives = 186/399 (46%), Gaps = 27/399 (6%)

Query: 15  VAALAVPALLLGAGLPAATAQAADPVKIGAFFALSGPTAPVGTPTKLVAQMFVDKVNKEG 74
           +  LA  A+ LGA L AA+A AAD +K+G   +LSGP + +G P     +  V   ++ G
Sbjct: 7   IRTLAAVAVGLGA-LSAASAWAAD-LKVGFITSLSGPVSSLGIPYDKGMKAAVAYKSEVG 64

Query: 75  GINGRPIELVLGDTEGDPTKAVLTFKRFVSEEKVVAVIGPTRTDEGMAVKRQIESSGIPT 134
           G   R ++++  D   DP+ A    ++ + E+KV  +IG       +A+      +  P 
Sbjct: 65  G---RKVQVIQLDDASDPSTAARNARKLIEEDKVDVIIGTAGAPGSLAIAGVARETKTPL 121

Query: 135 VMTVGGDPVIMEGKLGNMDFGTARSVFKSPQRSSTAVRKVLGYLKKHELTKVALLLSGDN 194
           +     D    EG            +   PQ +   +  ++  +K+  +  VA +   D 
Sbjct: 122 ISIANADLAGEEGAW----------MVTLPQPAPLMMGAMVEKMKQAGVKTVAYIGYSDA 171

Query: 195 FGQDGERWLRSLAPEYGIEIVGTEQFKPTDVDMKTQLTALAGKGPQAVICWTIGPAGALV 254
           +G      L   AP  GI++V  E++  +D  +  Q+  +    P AVI    G  GAL 
Sbjct: 172 WGDLVYDALMKSAPAAGIKVVSNERYARSDSSVAGQVLKIVALRPDAVITGASGTPGALP 231

Query: 255 SKNHHALGLTMPLLQCHGLPDPAYIKLAGEASEGDLMPATKLMTWEALPDGDPQKKVIAE 314
                  G    +   H L +P +I++ G + EG L P   ++  E LPD +P KK+  +
Sbjct: 232 YLALAERGYKGKIYGMHSLINPDFIRVGGPSVEGLLAPTGPVVVAEQLPDSNPMKKIAMD 291

Query: 315 FVRLYRDEYKYDAQYPLNTHSGYAWDALLLLVEAMRKV-------GTEPAR--VRDALEA 365
           F   Y+   K +   P +T S Y++DA L+ ++A ++        GT   R  +RDA+ +
Sbjct: 292 FRTAYQ---KANGAPPTDTFSAYSFDAWLIYLDAAQRALASKAEPGTPQFRLALRDAIVS 348

Query: 366 TRGLVGVSGVFTLGPQDHNGLGEDSMVMLQVRGGRFVMV 404
           T+ LVG   V+   P D  G  + S V++++  G++ +V
Sbjct: 349 TKELVGTHSVYNFKPTDRYGSDDRSRVVVKLEKGQWKLV 387