Pairwise Alignments

Query, 479 a.a., RNA methyltransferase, TrmA family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 470 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  272 bits (695), Expect = 2e-77
 Identities = 169/480 (35%), Positives = 246/480 (51%), Gaps = 39/480 (8%)

Query: 11  LLELTVDALAAGGRAVCRHEGRVVFVAGGLPGQRVRARLTTVKRRFAEATLDAVLEPSPV 70
           L  + ++ + A G+ + RH+  V+FVAG  PG  V  R+T  K+ F EA   A  E S +
Sbjct: 13  LEHIKIEDMVAEGKCLARHDNMVIFVAGVAPGDVVDLRITRKKKSFLEAEPVAFHELSEL 72

Query: 71  QCAPFCAHFGDCGGCAWQDLPYAEQLRWKERFVVDALGRIGGLRDANVLPILASPAERGF 130
           +  PFC HFG CGGC WQ + Y  QL +K++ V D L RIG +      PIL S   R +
Sbjct: 73  RVQPFCEHFGTCGGCKWQHIGYDTQLHFKQKQVKDNLERIGKVPLPAFDPILGSANTRYY 132

Query: 131 RNKMEFAFSQ---------------DRDGQLHLGLRRRASRAVVDITECHLQTPLTVRIV 175
           RNK+E+ FS                DRD  L   +  R  + ++DI  C+LQ   +  I 
Sbjct: 133 RNKLEYTFSNTSWLTKEQIQSGQEFDRDA-LGFHIPGRFDK-ILDIKHCYLQPDPSNAIR 190

Query: 176 EAVRELARESGLPGWDDSRQDGFWRFLVVREPELGRDAGADTPAEGEGQDTPGRQCLIQC 235
             VR+ A++  LP +D  +Q+G+ R L++R    G                      +  
Sbjct: 191 LEVRDYAKKHDLPFFDIVKQEGYMRNLIIRTANTGE---------------------VMV 229

Query: 236 ITGRHPGAAQAVSRLAEALRARFPEVTGVVHSLRLDPEQIAYGERVLAVDGEAVLTERLG 295
           I   +    + +  L + L A FPE+T + + +     +  +   V+   G   + E + 
Sbjct: 230 IVQVYEDRPEEMEALMQHLAATFPEITSLQYVVNSKGNETFHDLEVVCYKGLPYIHEDME 289

Query: 296 GNDLLLGPDSFFQTNTAAAGLLYDEARRMAAAGPDDTVWDLYSGVGAIALHLARAAGAVR 355
           G    +GP SF+QTN   A  LY + R +A    ++ V+DLY+G G IA  +A  A  V 
Sbjct: 290 GIKFRVGPKSFYQTNADQAYELYKKTRELANLTGNELVYDLYTGAGTIANFVAHQAREVI 349

Query: 356 GFEITPEAVNDARANAARNNILNCSFVSGDVRASLRRERPGEGVSPRIVVVDPPRAGLHE 415
           G E  P A+ DA+ N+  NNI N +F +GD++  L  E       P +V+ DPPRAG+HE
Sbjct: 350 GIEYVPSAIEDAKINSQINNITNTTFYAGDMKDILSDELIERHGRPDVVITDPPRAGMHE 409

Query: 416 DVVEAVSAHQPERIVYVSCNPATMARDAALFTARGYALQEARPVDLFPHSPHVECVALLT 475
           DVV+ +    P RIVYVSCNPAT ARD    + + Y +   +PVD+FP + HVE + LLT
Sbjct: 410 DVVKKLLQVHPNRIVYVSCNPATQARDVEWLSEK-YDVTRVQPVDMFPQTHHVENIVLLT 468