Pairwise Alignments

Query, 479 a.a., RNA methyltransferase, TrmA family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Serratia liquefaciens MT49

 Score =  134 bits (338), Expect = 4e-36
 Identities = 106/407 (26%), Positives = 182/407 (44%), Gaps = 33/407 (8%)

Query: 70  VQCAPFCAHFGDCGGCAWQDLPYAEQLRWKERFVVDALGRIGGLRDANVLPILASPAERG 129
           + CA + A  G C  C W + PY +QL  K+  +   L      RD        +  +  
Sbjct: 1   MHCALYAA--GTCRSCQWLEKPYPQQLTDKQHHLQSLLAE----RDVAHWLAPIAGEQSA 54

Query: 130 FRNKMEFAFSQDRDGQLHLGLRRRASRAVVDITECHLQTPLTVRIVEAVRELARESGLPG 189
           FRNK +   S   +  L LG+  R    V D++ C L       +   ++     +GL  
Sbjct: 55  FRNKAKMVVSGSVERPL-LGMLHRDGTPV-DLSGCPLYPASFAPMFAVLKSFIARAGLTP 112

Query: 190 WDDSRQDGFWRFLVVREPELGRDAGADTPAEGEGQDTPGRQCLIQCITGRHPGAAQAVSR 249
           ++ +R+ G  ++L++ E                   T     +++ +  R  G    +  
Sbjct: 113 YNVARKRGELKYLLLTE------------------STHSGGVMLRFVL-RSEGKLAQLRA 153

Query: 250 LAEALRARFPEVTGVVHSLRLDPEQIAYGERVLAVDGEAVLTERLGGNDLLLGPDSFFQT 309
               L+ + P++  +  +++     I  GE  + +  +  L E+     L + P SFFQT
Sbjct: 154 ALPWLQQQLPQLRVISANIQPVHMAIMEGELEIPLTEQQALEEQFNQVPLYIRPQSFFQT 213

Query: 310 NTAAAGLLYDEARRMAAAGPDDTVWDLYSGVGAIALHLARAAGAVRGFEITPEAVNDARA 369
           N   A  LY  AR    A   +++WDL+ GVG   LH A+    + G EI+ EA+  AR 
Sbjct: 214 NPKVAAELYATARDWVRALGIESMWDLFCGVGGFGLHCAQTDTRLTGIEISAEAIACARQ 273

Query: 370 NAARNNILNCSFVSGDVRASLRRERPGEGVSPRIVVVDPPRAGLHEDVVEAVSAHQPERI 429
           +A    +   +F + D      +    EG  P++V+V+PPR G+ +D+ + ++   P  I
Sbjct: 274 SAKTLGLQQVNFQALD----STKFATAEGSVPQLVLVNPPRRGIGKDLCDYLNQMAPGYI 329

Query: 430 VYVSCNPATMARDAALFTARGYALQEARPVDLFPHSPHVECVALLTR 476
           +Y SCN  TM++D  +     Y ++  +  D+FPH+ H E + LL R
Sbjct: 330 LYSSCNAETMSKDIGMLP--DYRIERVQLFDMFPHTAHYEVLTLLVR 374