Pairwise Alignments

Query, 479 a.a., RNA methyltransferase, TrmA family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 449 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Serratia liquefaciens MT49

 Score =  173 bits (438), Expect = 1e-47
 Identities = 141/471 (29%), Positives = 215/471 (45%), Gaps = 46/471 (9%)

Query: 4   TTPRPGDLLELTVDALAAGGRAVCRHEGRVVFVAGGLPGQRVRARLTTVKRRFAEATLDA 63
           TT +   +L LTVD L   G+ V  H G+ +FV G LPG++   +LT  K +FA+  L  
Sbjct: 12  TTRQNSPVLTLTVDNLDPFGQGVAHHNGKAIFVPGVLPGEQAEVQLTEEKNKFAKGRLKR 71

Query: 64  VLEPSPVQCAPFCAHFGDCGGCAWQDLPYAEQLRWKERFVVDALGRIGGLRDANVLPILA 123
           +L  SP +  P C HFG CGGC  Q    + Q + K   +V  + R  G+      P++A
Sbjct: 72  LLSRSPQRVEPRCPHFGVCGGCQQQHADESLQQQSKAAALVRMIARETGVTPQQE-PVIA 130

Query: 124 SPAERGFRNKMEFAFS-QDRDGQLHLGLRRRASRAVVDITECHLQTPLTVRIVEAVRELA 182
            P + G+R +       Q +  +L +G R+ AS  +V +T C +  P   +++  +R   
Sbjct: 131 GP-QYGYRRRARLGLLWQPKQQRLVMGFRQAASSDLVPVTRCPVLHPELEQLLTPLR--- 186

Query: 183 RESGLPGWDDSRQDGFWRFLVVREPELGRDAGADTPAEGEGQDTPGRQCLIQCITGRHPG 242
             S L     +R+ G    ++        D G                     +  RH  
Sbjct: 187 --SCLSALQVARRLGHVELVLA-------DNGP-------------------VLVLRHLD 218

Query: 243 AAQAVSRLAEALRARFPEVTGVVHSLRLDPEQIAYGERVLAVDGEAVLTERLGGNDLLLG 302
           A +   R A    AR   VT     + L P+     + +  + GE    + + G  L   
Sbjct: 219 ALKEDDRQALQAFARTKNVT-----IYLAPDS----DSLEKLCGETPYYQ-VDGLRLDFS 268

Query: 303 PDSFFQTNTAAAGLLYDEARRMAAAGPDDTVWDLYSGVGAIALHLARAAGAVRGFEITPE 362
           P  F Q N      +  +A    +  P+D V DL+ G+G   L LAR A AV G E    
Sbjct: 269 PRDFIQVNDHVNQQMVAQALEWLSIQPNDRVLDLFCGMGNFTLPLARRAAAVVGIEGVAT 328

Query: 363 AVNDARANAARNNILNCSFVSGDVRASLRRERPGEGVSPRIVVVDPPRAGLHEDVVEAVS 422
            V + + NA  N + N SF   ++   + ++ P        V++DP RAG    V+  + 
Sbjct: 329 LVANGQYNAHNNRLNNASFFHENLEEDVEQQ-PWAAQGFDKVMLDPARAGA-AGVMSHIV 386

Query: 423 AHQPERIVYVSCNPATMARDAALFTARGYALQEARPVDLFPHSPHVECVAL 473
              PER+VYVSCNP T+ARD+ +  + GY L   R +D+FPH+ H+E +AL
Sbjct: 387 KLAPERVVYVSCNPTTLARDSKVLLSAGYRLARVRMLDMFPHTGHLESMAL 437