Pairwise Alignments

Query, 479 a.a., RNA methyltransferase, TrmA family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 376 a.a., 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  135 bits (339), Expect = 3e-36
 Identities = 114/408 (27%), Positives = 177/408 (43%), Gaps = 33/408 (8%)

Query: 70  VQCAPFCAHFGDCGGCAWQDLPYAEQLRWKERFVVDALGRIGGLRDANVLPILASPAERG 129
           +QCA + A  G C  C W      EQL  K     D    + GL        +  P E+ 
Sbjct: 1   MQCALYDA--GRCRSCQWITQSVNEQLSAK---TADLHRLLAGLPVEQWCAPIGGP-EQH 54

Query: 130 FRNKMEFAFSQDRDGQLHLGLRRRASRAVVDITECHLQTPLTVRIVEAVRELARESGLPG 189
           FRNK +   S   +  L   L R  +   VD+  C L       +  A++     +GL  
Sbjct: 55  FRNKAKMVVSGSVEKPLFGMLHRDGTP--VDLCGCPLYPASFDPVFSALKPFIARAGLTP 112

Query: 190 WDDSRQDGFWRFLVVREPELGRDAGADTPAEGEGQDTPGRQCLIQCITGRHPGAAQAVSR 249
           ++ +R+ G  ++L++ E +             E + T  R  L                 
Sbjct: 113 YNVARKRGELKYLLLTESQFDGGMMLRFVLRSETKLTQLRAAL----------------- 155

Query: 250 LAEALRARFPEVTGVVHSLRLDPEQIAYGERVLAVDGEAVLTERLGGNDLLLGPDSFFQT 309
               LRA+ P++  +  +++     I  GE  + +  +  L ER     L + P SFFQT
Sbjct: 156 --PWLRAQLPQLRVITANIQPVHMAIMEGETEIYLTDQQALAERFNDVPLWIRPQSFFQT 213

Query: 310 NTAAAGLLYDEARRMAAAGPDDTVWDLYSGVGAIALHLARAAGAVRGFEITPEAVNDARA 369
           N   A  LY  AR      P   +WDL+ GVG   LH A     + G EI PEA+  A+ 
Sbjct: 214 NPTVASRLYATARDWVGQLPVRHMWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQ 273

Query: 370 NAARNNILNCSFVSGDVRASLRRERPGEGVSPRIVVVDPPRAGLHEDVVEAVSAHQPERI 429
           +AA   +    F + D      +    +G +P +V+V+PPR G+ + + + ++   P  I
Sbjct: 274 SAAELGLTRLHFQALD----STQFATAQGETPDLVLVNPPRRGIGKPLCDYLAQMAPRFI 329

Query: 430 VYVSCNPATMARDAALFTARGYALQEARPVDLFPHSPHVECVALLTRT 477
           +Y SCN  TMA+D  +     Y +Q  +  D+FPH+ H E +ALL R+
Sbjct: 330 IYSSCNAQTMAQD--IRHLPNYRIQRVQLFDMFPHTAHYEVLALLRRS 375