Pairwise Alignments

Query, 479 a.a., RNA methyltransferase, TrmA family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 433 a.a., 23S rRNA m(5)U1939 methyltransferase, SAM-dependent from Escherichia coli BL21

 Score =  151 bits (381), Expect = 5e-41
 Identities = 134/474 (28%), Positives = 206/474 (43%), Gaps = 54/474 (11%)

Query: 4   TTPRPGDLLELTVDALAAGGRAVCRHEGRVVFVAGGLPGQRVRARLTTVKRRFAEATLDA 63
           TT R   ++ ++V+ L + G+ V RH G+ +F+ G LP +     +T  K+++A A +  
Sbjct: 11  TTTR--QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVR 68

Query: 64  VLEPSPVQCAPFCAHFGDCGGCAWQDLPYAEQLRWKERFVVDALGRIGGLRDANVLPILA 123
            L  SP +  P C HFG CGGC  Q      Q R K      AL R   L   +V  ++A
Sbjct: 69  RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALAR---LMKHDVSEVIA 121

Query: 124 SPAERGFRNKMEFAFSQ-DRDGQLHLGLRRRASRAVVDITECHLQTPLTVRIVEAVRELA 182
                G+R +   + +   +  QL +G R+  S  +VD+ +C +  P    ++  VR   
Sbjct: 122 D-VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC- 179

Query: 183 RESGLPGWDDSRQDGFWRFLVVREPELGRDAGADTPAEGEGQDTPGRQCLIQCITGRHPG 242
               L      R  G    +                     Q T G   ++     RH  
Sbjct: 180 ----LGSLQAMRHLGHVELV---------------------QATSGTLMIL-----RHTA 209

Query: 243 AAQAVSRLAEALRARFPEVTGVVHSLRLDPEQIAYGERVLAVDGEAVLTERLGGNDLLLG 302
              +  R  E L  RF    G+   L L P+     E +  V GE    +   G  L   
Sbjct: 210 PLSSADR--EKLE-RFSHSEGL--DLYLAPDS----EILETVSGEMPWYDS-NGLRLTFS 259

Query: 303 PDSFFQTNTAAAGLLYDEARRMAAAGPDDTVWDLYSGVGAIALHLARAAGAVRGFEITPE 362
           P  F Q N      +   A  +    P+D V DL+ G+G   L LA  A +V G E  P 
Sbjct: 260 PRDFIQVNAGVNQKMVARALELLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319

Query: 363 AVNDARANAARNNILNCSFVSGDVRASLRRERPGEGVSPRIVVVDPPRAGLHEDVVEAVS 422
            V   + NA  N + N +F   ++   + ++   +    + V++DP RAG    V++ + 
Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDK-VLLDPARAGA-AGVMQQII 377

Query: 423 AHQPERIVYVSCNPATMARDAALFTARGYALQEARPVDLFPHSPHVECVALLTR 476
             +P RIVYVSCNPAT+ARD+      GY +     +D+FPH+ H+E + L +R
Sbjct: 378 KLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431