Pairwise Alignments

Query, 452 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 528 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  322 bits (825), Expect = 2e-92
 Identities = 172/384 (44%), Positives = 247/384 (64%), Gaps = 5/384 (1%)

Query: 6   VLLVEDELSMLLGMQHALSQAGYEVATAGDAEKAQQLLRQRPFDLVITDLRLPGMNGMEL 65
           +L+++DE    L ++  +  +G+ V  AG  E+  + L Q   ++V+ D+R+PGM+G E 
Sbjct: 4   LLVIDDEPGHRLMVRAVMEDSGWSVEEAGSGEEGLEHLAQDRVNVVLLDMRMPGMDGQET 63

Query: 66  LEGICELYPGTGVILITAFPEVELAVQAIKAGAFDFLCKPFPRDGLLIAVERYFRFLDLK 125
           L  I E+YPG  V+++TAF  V  AV A+K GAFD+L KP   + L   +E+ + F  L 
Sbjct: 64  LARIQEMYPGLPVVMLTAFGTVGSAVVAMKKGAFDYLTKPADNEELTAVLEKAWDFGRLL 123

Query: 126 RENARLRGERDDGE----FIGESPMMLKVFERIRAIAGSCVPVLVLGPSGSGKELVAGAL 181
            EN  LR    D +     +G S  M +V + IR    S   +L++G SG+GKEL+A  L
Sbjct: 124 EENENLRRRLSDDDPTAPIVGASQAMCRVRDFIRQAGPSEATILIMGESGTGKELIAQGL 183

Query: 182 HRLSKRRDKPFIKINCAALPEHLLESELFGHEKGAFTGAQQARKGKFEAADGGTLFFDEA 241
           H  S R D+P +K+NCAALP HLLESELFG+ KGAFTGA + + G+F+ A GGTLF DE 
Sbjct: 184 HDASNRADQPLVKVNCAALPGHLLESELFGYMKGAFTGAVRDKPGRFQLARGGTLFLDEI 243

Query: 242 GEMPLAVQAKLLRVLEDQEVTPVGGNMPRKVDVRTVFATARDLEEAIGAGTFREDLYYRI 301
           GE+PL +Q+KLLR L+++ V P+G   P  VDVR + AT RDL+ A+ AG FREDL++R+
Sbjct: 244 GELPLELQSKLLRALQERVVEPLGAVRPVPVDVRIIAATNRDLKRAVEAGEFREDLFFRL 303

Query: 302 NVVPVTLPPLRERGGDVALLAERFLRRFCAQHDRQV-TFSEQARNALLAYDYPGNVRELR 360
           NV+ V  PPLR+R  D+ +LA R L R C ++ + + + S +  +AL+ Y +PGNVREL 
Sbjct: 304 NVLEVISPPLRDRLEDLPMLAGRLLERLCRKNKKGIRSVSPEFLDALMRYSWPGNVRELE 363

Query: 361 NAIERAVILCAEDKIHVGHLPKRI 384
           N +ERA+IL   D +    LP ++
Sbjct: 364 NVLERALILSRSDTLGPDSLPSQV 387



 Score = 35.0 bits (79), Expect = 6e-06
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 412 EKKRILEALQKTGGRRIRAAELLGITRKQLWLKLKELDI 450
           E+  +L AL+  GG R R A+ LGI+R+ L  KLK+  +
Sbjct: 485 ERDALLRALEVHGGHRERTADALGISRRTLQYKLKKFGL 523