Pairwise Alignments

Query, 277 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 295 a.a., carbohydrate ABC transporter permease from Dickeya dadantii 3937

 Score =  218 bits (556), Expect = 9e-62
 Identities = 111/257 (43%), Positives = 162/257 (63%), Gaps = 4/257 (1%)

Query: 25  AVLWALPLLYAVWTAFHPSEFSTRFTLAAP---LTLDNFRAAWDAAPFARYLVNTVLLVT 81
           A+LW  P ++ + +AF  + F T      P   LTLDNFR AW +A +     NT+    
Sbjct: 39  ALLWVSPFIWMLSSAFSATTFGTGMASLLPRWPLTLDNFRDAWQSADWISLYANTIFFTF 98

Query: 82  MVLAGQLVLCTLAAYAFAKYDFPGKGILFALVLMQLMIMPDVLVVENYRTMSAIGVLDST 141
                QL+  T A Y FA ++  GK  LF L L+QLMIMP  ++V N  T+ A G+L++ 
Sbjct: 99  GTFFVQLLTITTAGYVFACHELRGKQTLFLLFLVQLMIMPVAMMVPNMMTLKAFGLLNTL 158

Query: 142 LAIGLPYMASAFGIFLLRQTFKSIPKELDEAAAVEGASTLQILWKVYVPLGKPVYLAYAL 201
             + +PY  SAFG+FL+RQ F +IPKE++EAA +EG    Q+L++V +P+  P  LA+A 
Sbjct: 159 TGVMMPYFTSAFGVFLMRQAFLAIPKEIEEAALMEGCRWWQVLFRVLLPMSWPSILAFAT 218

Query: 202 VSVSYHWNNFLWPLIVTNTTNSRPLTVGLQVFS-STEQGVDWSIITAATLMTSGPLLIGF 260
           VS++YHWN +LWPL++ N  + + LTVGL  F+   E G  W +I+A TLM   PL++ F
Sbjct: 219 VSITYHWNEYLWPLMMLNDPDKQVLTVGLVSFAMGAESGGQWGMISAGTLMVCLPLMLAF 278

Query: 261 LLFQRQFVQSFMRAGIK 277
           ++FQ+QF++SF  +GIK
Sbjct: 279 IVFQKQFLRSFGFSGIK 295