Pairwise Alignments

Query, 492 a.a., DNA repair protein RadA (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 460 a.a., predicted repair protein (NCBI) from Escherichia coli BW25113

 Score =  329 bits (844), Expect = 1e-94
 Identities = 181/451 (40%), Positives = 262/451 (58%), Gaps = 11/451 (2%)

Query: 4   RETYVCTACGARAPQWRGQCPACKEWNTL---ELTVAPREGKAGARPGASSVGAQSRAQP 60
           +  +VC  CGA  P+W+GQC AC  WNT+    L  +P   +     G +     ++ Q 
Sbjct: 6   KRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQK 65

Query: 61  LKDVADHGAEPFGSGLDALDRVLGKGLVPGAAILVGGEPGIGKSTLLLQVAGAVAAAGRG 120
           L D++      F +G    DRVLG G+VPG+AIL+GG PG GKSTLLLQ    +A   + 
Sbjct: 66  LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMK- 124

Query: 121 VLYLSGEESLPQLKARAARLGVLHDELMAVATTRLDDVLPHLEGPEAPALLIVDSVQTVS 180
            LY++GEESL Q+  RA RLG+  D L  ++ T ++ +    E  E P L+++DS+Q + 
Sbjct: 125 TLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE-EEQPKLMVIDSIQVMH 183

Query: 181 SDRAEGLPGNVSQVRAVSTEIVEACKRSGTTVLLVGHVTKDGALAGPRLLEHLVDTVISI 240
               +  PG+V+QVR  +  +    K  G  +++VGHVTKDG+LAGP++LEH +D  + +
Sbjct: 184 MADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLL 243

Query: 241 EGDRRQMFRLLRVLKNRFGPNQELLVFRMVEQGMEVVEDPSTFFLGARDPALSGTALVMA 300
           +GD    FR LR  KNRFG   EL VF M EQG+  V +PS  FL   D   SG+++++ 
Sbjct: 244 DGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVV 303

Query: 301 VDGQRPLAVEVQALVTRSYLAIPRRTGLGFDVNRLHLLLAVLEKRLRLNFGQVDIYAKIG 360
            +G RPL VE+QALV  S +A PRR  +G + NRL +LLAVL +   L     D++  + 
Sbjct: 304 WEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVV 363

Query: 361 GGMKLQDPGMDLGLVAAVLSSFYDLPLPERAVFWGEVDLNGQVRPVAAHTIRRDQARRLG 420
           GG+K+ +   DL L+ A++SS  D PLP+  V +GEV L G++RPV +   R  +A + G
Sbjct: 364 GGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHG 423

Query: 421 YTPILHPADDAARGVPT------VAALQDAL 445
           +   + PA +  +  P       V  L DAL
Sbjct: 424 FRRAIVPAANVPKKAPEGMQIFGVKKLSDAL 454