Pairwise Alignments

Query, 160 a.a., transcription elongation factor GreA (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 158 a.a., transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) from Escherichia coli BW25113

 Score =  147 bits (371), Expect = 8e-41
 Identities = 77/157 (49%), Positives = 109/157 (69%), Gaps = 2/157 (1%)

Query: 1   MSSIPISTEGYDRLMKELERLKS-ERPAIIQAIKEAREEGDLKENAGYDAARERQGMLEA 59
           M +IP++  G ++L +EL+ LKS  RP II AI EARE GDLKENA Y AARE+QG  E 
Sbjct: 1   MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 60  RISYIESRMAQFNVINLDSLSGD-KVMFGATVEIEDLDSGEAKRYTLLGPDEADYAQGTI 118
           RI  IE++++   VI++  +  + +V+FGATV + +LDS E + Y ++G DEAD+ Q  I
Sbjct: 61  RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLI 120

Query: 119 SVLSPVARALLGKEEGDEIVVDAPRGRISYEIISVAF 155
           SV SP+AR L+GKEE D +V+  P G + +E+I V +
Sbjct: 121 SVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEY 157