Pairwise Alignments

Query, 557 a.a., AMP-dependent synthetase and ligase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 566 a.a., AMP-dependent synthetase from Pseudomonas simiae WCS417

 Score =  400 bits (1027), Expect = e-116
 Identities = 226/541 (41%), Positives = 312/541 (57%), Gaps = 20/541 (3%)

Query: 11  DYKEFCATFRIDAPDTFNFAFDVLDPIAAADPGRLCIAHVDDAGVRRDYTFAWMAEASAK 70
           DY      FR      FN+A D  D +A  +P    +  V++ G  + Y+F  +A  S +
Sbjct: 18  DYATAVRDFRWPQLGEFNWALDYFDAMAEGNPAD-ALWIVEEDGSEQRYSFQQLAARSNQ 76

Query: 71  LANALRLRGIRKGDRVMLVLYRRIEFWVSMLALHRLGAVAIPAPAQLTPKDIVFRVERAK 130
           +AN LR  G+ +GDRV+L+L   +  W +MLA  +LGAV IPA A L P D+  R+ER +
Sbjct: 77  VANHLRALGVNRGDRVLLMLGNDVALWDTMLAAFKLGAVVIPATALLNPDDLRDRIERGQ 136

Query: 131 TRCVIVDHSITERVEAARPDCPGLAVCVQVGGDALPRGWVDYDTIFTPAEARFPRPESPL 190
            R V+V  +   +       C  + V       + P GWV ++  F      +P      
Sbjct: 137 VRHVVVGEAHVHKFAGLAQGCSRICV------GSAPAGWVAHNAAF-----EYPEQFEAQ 185

Query: 191 EFAGGEDPLLIFFSSGTTGMPKMVEHVH-TYPLGHLLTGMYWHDLVPGDLHLTLADTGWG 249
                 DP+L++F+SGTT  PKMV H H +YP+GHL T MYW  L PGDLHL ++  GW 
Sbjct: 186 GRTLATDPMLLYFTSGTTSKPKMVLHSHQSYPVGHLST-MYWIGLQPGDLHLNISSPGWA 244

Query: 250 KAVWGKFYGQWMAGASVFVYDFRGKFEPAALLDVLAAHAVTTFCAPPTVYRFLVRQDLSA 309
           K  W   +  W AGA +F+++   +F   ALL  L  + VT+ CAPPTV+R L+++DL++
Sbjct: 245 KHAWSCLFAPWNAGACIFIHNV-ARFSAPALLSALERYGVTSLCAPPTVWRMLIQEDLAS 303

Query: 310 Y-DLSKLRHCTTAGELLNDSVFHDWKAATGLEIHEGYGQTETTLQIATLPCMTPKAGSIG 368
           Y     LR    AGE LN  +    + A GL + +G+GQ+ETT  +   P    K GS+G
Sbjct: 304 YRPRLSLRELVGAGEPLNPEIIEQIQQAWGLPLRDGFGQSETTALVGNTPGQLLKPGSMG 363

Query: 369 RPMPGWDVVLQDAAGNICPPGEEGEICVRVAEGLPVGLFRGYLEEPEKTASVMFGGYYHT 428
           RP+PG+ V L D  G    PG EGE+ + + +  P+GL   Y + PEKTA VM  GYY T
Sbjct: 364 RPLPGYQVALLDPDGI---PGNEGEVALPL-DVRPLGLMLCYEDSPEKTAEVMRDGYYRT 419

Query: 429 GDKAWMDEDGYYWFLGRVDDLIKSSGYRIGPFEVESALVAHPAVVEAAVTGVPDPLRGQA 488
           GD A +D DGY  F+GR DD+ K+S YRI PFE+ESAL+ HPAV+E AV   PDPLR   
Sbjct: 420 GDTAQIDADGYITFVGRADDVFKASDYRISPFELESALIEHPAVMEVAVVPSPDPLRLAV 479

Query: 489 VKATVVLAAGYTASDALTKELQDHVKKVTAPYKYPRIIDYVAELPKTISGKIKRAEIRER 548
            KA ++LA     S AL + +    ++  APYK  R I++V ELPKTISGKI+R E+R+ 
Sbjct: 480 PKAFLILAHDEPGSAALAQHILAFAREHLAPYKRVRRIEFVTELPKTISGKIRRVELRQM 539

Query: 549 D 549
           +
Sbjct: 540 E 540