Pairwise Alignments

Query, 404 a.a., Type II secretion system protein F from Methylophilus sp. DMC18

Subject, 398 a.a., type II secretion system inner membrane protein GspF from Escherichia coli Nissle 1917

 Score =  187 bits (474), Expect = 6e-52
 Identities = 103/397 (25%), Positives = 213/397 (53%), Gaps = 2/397 (0%)

Query: 4   FEYKGRTEDGMMVTGVQEAADADALGAALIGTRITPIEIKPKKTSGVAINLFEEKITSLE 63
           + Y+  T+DG  + G+ +A D       L    +  ++I+P+K+SGV       +I+  E
Sbjct: 3   YRYRAMTQDGQKLQGIIDANDERQARLRLREEGLFLLDIRPQKSSGVKTR--RPRISHSE 60

Query: 64  VMIFSKQMYTLLKAGIPIMRALSGIQSSVGNPKLAQVVGQLRVSLDSGRELSVAMTEHPK 123
           + +F++Q+ TL  A +P+  +L+ I     N +LA V+ Q+R ++  G  LS A+   P 
Sbjct: 61  LTLFTRQLATLSAAALPLEESLAVIGQQSSNNRLADVLNQVRSAILEGHPLSDALQHFPT 120

Query: 124 VFDSFYISMIRVGETTGNLDNIFLRLSEHIEFDRFMRGQIKSALQYPMFVLTAMAIAIVV 183
           +FDS Y ++++ GE +G L  +  +L+++ E  + +R ++  +L YP  + T   + +++
Sbjct: 121 LFDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQSLIYPCMLTTVAIVVVII 180

Query: 184 INVMVIPQFEKVFASMHADLPMITKMLIAFSNFMRNYWFVLIGMIAAAGWSFKTYVKTAS 243
           +   V+P+  + F  M   LP+ T++L+  S+ ++     L+  +      F  ++K  +
Sbjct: 181 LLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPTLLATVFIVAVGFWLWLKRGN 240

Query: 244 GRSNWDRIKMRIPIAGKIIFKGTMARFARSFALSTRSGLPILSALRLVSQTVENDYISAK 303
            R  +  + +R+ + G +I     AR+ R+ ++   SG+P+L  + L ++++ N  I  +
Sbjct: 241 NRHRFHAMLLRVALIGPLICAINSARYLRTLSILQSSGVPLLDGMNLSTESLNNLEIRQR 300

Query: 304 ILSMSAGIERGETILRTATQTGVFNSLVLQMIAVGEESGSLDTLMQEIADMYQADVEYDV 363
           + + +  + +G +I  +  QT +F  ++L M+A GE+SG L TLM   AD  +   +  +
Sbjct: 301 LANAAENVRQGNSIHLSLEQTAIFPPMMLYMVASGEKSGQLGTLMVRAADNQETLQQNRI 360

Query: 364 KTLGAQIEPILIMFLGALVLVLALGVFLPIWDMSSVM 400
               +  EP LI+ +  +VL + + V  P+  ++S++
Sbjct: 361 ALTLSIFEPALIITMALIVLFIVVSVLQPLLQLNSMI 397