Pairwise Alignments

Query, 589 a.a., hypothetical protein from Methylophilus sp. DMC18

Subject, 642 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score = 95.5 bits (236), Expect = 6e-24
 Identities = 72/238 (30%), Positives = 113/238 (47%), Gaps = 4/238 (1%)

Query: 8   TEIEVILAQRNLLPLFQPIIDIKQAQVFAHEALIRGPLESK-LHAPIALLNAAKLCGRDI 66
           T +   L Q  L   +QPI D++Q  +   EAL+R     K L AP   +  A+  G   
Sbjct: 383 TALRQALEQGQLRLHYQPIYDLRQGTISGFEALVRWQHPEKGLIAPGVFIPIAEETGLIS 442

Query: 67  EMESIARDVIFEEYRR-ANHAMPL-FVNFSPDALLHSESDWSLSLAQ-LENYQLAASDIV 123
            ++    +    + R       PL F+  +  + L    +  L +A  L    L A  + 
Sbjct: 443 AIDHWVLEQACNQAREWLGQGHPLGFIAVNISSRLFGNGELDLQVATILARSGLEARHLE 502

Query: 124 IEITESSTIRDYAELKEAVTKLKALGFKIALDDLGEGTSSLRLWSELSPHYVKIDKHFIA 183
           +EITES+ ++D     E + +L+ALG ++A+DD G G SSL+    ++ H +KID+ F+ 
Sbjct: 503 LEITESAVMQDPDAALELLQRLRALGVQLAIDDFGTGYSSLQRLKRMNVHKLKIDQGFVR 562

Query: 184 NIHNDPIKLEFVRGIQKIALESNTLTIAEGIETKEELAVIKDLKIDYAQGYLLGRPFP 241
            + +D       R +  +A       +AEGIET E+ A +     DY QGY   RP P
Sbjct: 563 GLPDDRDDAAITRSVIGLAHNLGLKVVAEGIETAEQAAFLLAQNCDYGQGYGFARPQP 620



 Score = 44.3 bits (103), Expect = 2e-08
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 6/118 (5%)

Query: 388 YVGMGSGHALLREVTNMQIHAARYANPLTLLPGNVPINAHIDKLLERRIAF----VACYC 443
           YV + S  + L+         A Y +PL  LP  +       + LER  A          
Sbjct: 184 YVAVFSDLSALKRSREELDQLAHY-DPLVNLPNRLLFTERAKQDLERARAHKRSGALLLI 242

Query: 444 DLDHFKPFNDAYGYRRGDEVIQFVGRMLSSMVNHEHDFVGHIGGDDFVIVFQSEDWER 501
           DLDHFK  N++ G+  GD ++Q V   LS  +  +   +G +GGD+F ++ +    E+
Sbjct: 243 DLDHFKDINESLGHSLGDALLQAVSTRLSEHL-EKGMTLGRLGGDEFALLCEGYGAEK 299