Pairwise Alignments

Query, 589 a.a., hypothetical protein from Methylophilus sp. DMC18

Subject, 820 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

 Score =  102 bits (253), Expect = 8e-26
 Identities = 74/230 (32%), Positives = 110/230 (47%), Gaps = 15/230 (6%)

Query: 21  PLFQPIIDIKQAQVFAHEALIRGPLESKLHAPIA-------LLNAAKLCGRDIEMESIAR 73
           P+FQPIID+    V  HE L R      LH P A       L+  A+  G  +E++    
Sbjct: 570 PVFQPIIDVTSGAVVGHETLAR------LHDPAAIGLTMDVLIPVAERFGLAVEIDRQII 623

Query: 74  DVIFEEYRR-ANHAMPLFVNFSPDALLHSESDWSLSLAQL-ENYQLAASDIVIEITESST 131
             + E     A      F++F+  A    +     ++ +L    +L    ++ EITE++ 
Sbjct: 624 LAVTEALAEDAGWLEGGFLSFNLSAQSVGDGRIFSAVRRLIATRRLPPQALIFEITETAA 683

Query: 132 IRDYAELKEAVTKLKALGFKIALDDLGEGTSSLRLWSELSPHYVKIDKHFIANIHNDPIK 191
           I   A  +  +  L  LG K ALDD G G SS     EL   ++KID  ++ +IH+DP+K
Sbjct: 684 IASLAAARTFLKALTDLGCKTALDDFGSGYSSFTYLRELPVDFLKIDGRYVRDIHHDPVK 743

Query: 192 LEFVRGIQKIALESNTLTIAEGIETKEELAVIKDLKIDYAQGYLLGRPFP 241
              V+ I  +A      TIAE +E    L V++   +D AQG+L GRP P
Sbjct: 744 AAMVQAINTVAHAMGMRTIAECVEEASGLEVLRQSGVDCAQGFLFGRPAP 793



 Score = 42.7 bits (99), Expect = 6e-08
 Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 15/145 (10%)

Query: 395 HALLREVTNMQIHAARYA-----NPLTLLPGNVPINAHIDKLLERRIAFVAC-----YCD 444
           +AL+ +VT+ +    R       +PLT L         ++K + R   F A        D
Sbjct: 356 NALIADVTDRKAMIDRLTFLAQRDPLTGLINRRSFFDDLEKAVARAGRFPAAGVAVISID 415

Query: 445 LDHFKPFNDAYGYRRGDEVIQFVGRMLSSMVNHEHDFVGHIGGDDFVIVFQSEDWERICR 504
           LD FK  ND+ G++ GD +++ V  +L   +  E D +  +GGD+F ++    + E    
Sbjct: 416 LDRFKYVNDSLGHQAGDCLLKEVAEVLFGRL-RETDLLARLGGDEFAVLLHGVNREGALH 474

Query: 505 DILDTVAKVMPDF---YDLKDVQSG 526
            + + +   + D+   YD K V+ G
Sbjct: 475 -VAEALRLCLADYAFSYDGKSVEIG 498