Pairwise Alignments

Query, 589 a.a., hypothetical protein from Methylophilus sp. DMC18

Subject, 752 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 95.5 bits (236), Expect = 7e-24
 Identities = 74/249 (29%), Positives = 114/249 (45%), Gaps = 17/249 (6%)

Query: 7   NTEIEVILAQRNLLPLFQPIIDIKQAQVFAHEALIRGPLESKLHAPIALLNAAKLCGRDI 66
           +T ++  L Q      FQPI+D     +   E L+R   E +  +P   +  A+  G  +
Sbjct: 491 HTLLKQALEQNAFELYFQPIVDATTGLIVRAEVLLRWQHEGQFISPDEFIPIAENSGLIV 550

Query: 67  EMESIARDVIFE---EYRRANHAMPLFVNFSP---------DALLHSESDWSLSLAQLE- 113
            +    R  + +   E +     M L +N S          D    S +D    L   + 
Sbjct: 551 SIGRCVRQAVMQTIVEMQALGWPMSLAINVSTFEFWSHELQDEFCDSFTDIIEGLGVEDF 610

Query: 114 NYQLAASDIVIEITESSTIRDYAELKEAVTKLKALGFKIALDDLGEGTSSLRLWSELSPH 173
            Y+L    I +EITES  ++ +A L + + +L+A G KI+LDD G G SSL   +     
Sbjct: 611 PYEL----ITLEITESLLMKKHAHLIQVLNELRARGIKISLDDFGTGYSSLSYLANFPID 666

Query: 174 YVKIDKHFIANIHNDPIKLEFVRGIQKIALESNTLTIAEGIETKEELAVIKDLKIDYAQG 233
            +KIDK FI  +      L  +  I +++   N    AEG+ET+E+L V+ D  I   QG
Sbjct: 667 QIKIDKSFIDRLAEGERHLALIEAIVRLSHALNLRVTAEGVETQEQLQVMMDNHIQEIQG 726

Query: 234 YLLGRPFPK 242
           YL  +P PK
Sbjct: 727 YLFYKPIPK 735



 Score = 39.7 bits (91), Expect = 5e-07
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 444 DLDHFKPFNDAYGYRRGDEVIQFVGRMLSSMVNHEHDFVGHIGGDDFVIVFQSEDWERIC 503
           DLD+FK  ND YG+ +GD ++  +   +   ++ +  F   +GGD+F I+      +R  
Sbjct: 352 DLDNFKQVNDTYGHDKGDVLLVQMVEQVKICLDPQAVF-ARLGGDEFAILLPGVVTQREL 410

Query: 504 RDILDTVAKVMPDFYDL 520
             + D + K +   Y+L
Sbjct: 411 SQLADKINKQVYRRYEL 427