Pairwise Alignments

Query, 311 a.a., Motility protein B from Methylophilus sp. DMC18

Subject, 324 a.a., Flagellar motor rotation protein MotB from Xanthomonas campestris pv. campestris strain 8004

 Score =  140 bits (353), Expect = 4e-38
 Identities = 89/279 (31%), Positives = 142/279 (50%), Gaps = 15/279 (5%)

Query: 1   MYRRHKLEDEEESHERWLISYADFITLLFAFFVVMYATSNINLNKYRALSSSVVNAFQG- 59
           M RR K  +E  +HE W I YAD +TLL AFFVVMYA S++N  KY+ ++ ++  AF G 
Sbjct: 1   MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQALTTAFGGS 60

Query: 60  ----QPGAVGQPQNMPQGLQTPGLPVPGAQNQNGQVPS--------AVMKPLPLSYLYQE 107
                P  +G  Q++      P +   GA       P+        A    +P+S   Q 
Sbjct: 61  SKAASPVQLGNTQSLGADYDRPSVIKAGAPMAASNGPTDPTILPSMAAQMRMPVSLRNQA 120

Query: 108 KKLRDQEKIRAMAQQLANTLGQWIEQKQITVYQSDLGVEMDISTHLLFQNNQAAYTPQAS 167
           +  R Q ++ A+AQQL  TL   I+++ IT+ + DL +E++I++ +LF    A     A 
Sbjct: 121 QLARAQRQMDAVAQQLNKTLSPLIDKQLITIRRRDLWIEVEINSDILFVTGSALLAGSAR 180

Query: 168 QILHIISAQLKNEYRTLQVEGHSDKHTFSGMVDAESKRWTLTATQAARVAATLAADGIAA 227
             L  ++A L++    ++VEG++D    +         W L+A +AA V    A +G+A 
Sbjct: 181 GTLSTLAAVLRDAPNGVRVEGYTDNQPIA--TAQFPSNWELSAARAASVVHLFADEGVAP 238

Query: 228 KRLSALGLAETRPVSSSDNNLAQSLNSRITLRILTAEAG 266
           +RL+ +G  E R  + +     ++ N R+ L IL   AG
Sbjct: 239 QRLAMVGYGEFRARADNSTEAGRNANRRVVLIILADSAG 277