Pairwise Alignments

Query, 174 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 388 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

 Score = 50.4 bits (119), Expect = 4e-11
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)

Query: 22  QNNLEKSQEMAEIGFAYIGI-DNDKAIEYYEKAIKLNPDDANAISFLGTLYDGEGDREKA 80
           + +++  +    +G  Y    D + AI Y E A + NP + + +  LG  Y    +  K 
Sbjct: 241 EKHIQNYEPWCRVGLLYYDTEDYETAIYYLELANERNPLNPSILVKLGRTYVKLRNYNKG 300

Query: 81  YEYLTKALEMEPK--NPWMY--YNLGLYYLNHDDNMAIGCFEKALRIDPENECCWSQLGY 136
            E++ KAL+ + +    W Y  Y L L   +++   AI C++KA+ I+  +   W  L  
Sbjct: 301 LEFMEKALDKDSEYAKAWCYKGYILNLLERHYE---AIDCYKKAISINKNDSKFWMHLSN 357

Query: 137 TYYDIGDYTNSKLNFEKAYEI 157
            Y  IG    SK  +E A  +
Sbjct: 358 VYKTIGKEDYSKEAYENAVNL 378



 Score = 48.5 bits (114), Expect = 1e-10
 Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 8/144 (5%)

Query: 23  NNLEKSQEMAEI----GFAYIGIDN-DKAIEYYEKAIKLNPDDANAISFLGTLYDGEGDR 77
           N LE+     EI    G A +G+   D+A+E YEK +K++P D      +G  +      
Sbjct: 136 NILERKPRYKEILAKKGTALVGLKKFDEALEIYEKVLKISPYDTEVWKNIGNAFYTVKKY 195

Query: 78  EKAYEYLTKALEMEPKNPWMYYNLG--LYYLNHDDNMAIGCFEKALRIDPENECCWSQLG 135
           EKA ++    L     +  +  + G  L  L    N A+  + K L    +N   W ++G
Sbjct: 196 EKAIQFYDMYLNEHKGDFGVTLSKGDALRKLGKT-NEALDLYTKVLEKHIQNYEPWCRVG 254

Query: 136 YTYYDIGDYTNSKLNFEKAYEINP 159
             YYD  DY  +    E A E NP
Sbjct: 255 LLYYDTEDYETAIYYLELANERNP 278



 Score = 43.1 bits (100), Expect = 6e-09
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 68  GTLYDGEGDREKAYEYLTKALEMEPKNPWMYYNLG-LYYLNHDDNMAIGCFEKALRIDPE 126
           GT Y   G  +K+ EY  K L  EPKNP  +Y  G  Y++     +A   +EKAL I P 
Sbjct: 19  GTEYYNSGKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYEKALSIRPN 78

Query: 127 N 127
           +
Sbjct: 79  D 79



 Score = 37.0 bits (84), Expect = 4e-07
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 98  YYNLGLYYLNHDDNMAIGCFEKALRIDPENECCWSQLGYTYYDIGDYTNSKLNFEKAYEI 157
           YYN G Y        +I  F K L  +P+N   W   G  Y+ +G    ++ ++EKA  I
Sbjct: 22  YYNSGKY------QKSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYEKALSI 75

Query: 158 NPKD 161
            P D
Sbjct: 76  RPND 79



 Score = 32.3 bits (72), Expect = 1e-05
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 29 QEMAEIGFAYIGIDN-DKAIEYYEKAIKLNPDDANAISFLGTLYDGEGDREKAYEYLTKA 87
          +++ E G  Y       K+IEY+ K +   P + +A  F G  Y   G  + A +   KA
Sbjct: 13 KKLLETGTEYYNSGKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYEKA 72

Query: 88 LEMEPKN 94
          L + P +
Sbjct: 73 LSIRPND 79



 Score = 29.6 bits (65), Expect = 6e-05
 Identities = 38/169 (22%), Positives = 58/169 (34%), Gaps = 36/169 (21%)

Query: 35  GFAYIGIDNDK-AIEYYEKAIKLNPDDA-------------------------------N 62
           G AY  +   K A + YEKA+ + P+D                                 
Sbjct: 53  GNAYHMLGKSKLAQDSYEKALSIRPNDLEIIKSYTMLLNSLELFKESVEILKNVSESDDK 112

Query: 63  AISFLGTLYDGEGDREKAYEYLTKALEMEPKNPWMYYNLG--LYYLNHDDNMAIGCFEKA 120
            I  LG  Y   G   +A       LE +P+   +    G  L  L   D  A+  +EK 
Sbjct: 113 IIEILGDAYLKTGKFNEAILQYNNILERKPRYKEILAKKGTALVGLKKFDE-ALEIYEKV 171

Query: 121 LRIDPENECCWSQLGYTYYDIGDYTNSKLNFEKAYEINPKDQYSDMIEK 169
           L+I P +   W  +G  +Y +  Y  + + F   Y    K  +   + K
Sbjct: 172 LKISPYDTEVWKNIGNAFYTVKKYEKA-IQFYDMYLNEHKGDFGVTLSK 219