Pairwise Alignments

Query, 174 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 614 a.a., hypothetical protein from Agrobacterium fabrum C58

 Score = 44.7 bits (104), Expect = 3e-09
 Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 7/121 (5%)

Query: 48  EYYEKAIKL-----NPDDANAISFLGTLYDGEGDREKAYEYLTKALEMEPKNPWMYYNLG 102
           E Y+KA+++        D +     G  Y+     +KA     +ALE+ P+ P +   LG
Sbjct: 412 ENYDKAVEVIGAVPQKSDWSVFFQRGIAYERLKQWDKAEPNFKRALELNPEQPQVLNYLG 471

Query: 103 LYYLNHDDNMAIGC--FEKALRIDPENECCWSQLGYTYYDIGDYTNSKLNFEKAYEINPK 160
             +++   N+  G     +A+ + P +      LG+ +Y +GD+  S    E+A E+   
Sbjct: 472 YSWVDKGINLDEGMKMISRAVELRPNDGYIVDSLGWAHYRLGDFDQSVTELERAIELKAG 531

Query: 161 D 161
           D
Sbjct: 532 D 532



 Score = 42.7 bits (99), Expect = 1e-08
 Identities = 26/111 (23%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 35  GFAYIGIDN-DKAIEYYEKAIKLNPDDANAISFLGTLYDGEG-DREKAYEYLTKALEMEP 92
           G AY  +   DKA   +++A++LNP+    +++LG  +  +G + ++  + +++A+E+ P
Sbjct: 437 GIAYERLKQWDKAEPNFKRALELNPEQPQVLNYLGYSWVDKGINLDEGMKMISRAVELRP 496

Query: 93  KNPWMYYNLG-LYYLNHDDNMAIGCFEKALRIDPENECCWSQLGYTYYDIG 142
            + ++  +LG  +Y   D + ++   E+A+ +   +      LG  Y+ +G
Sbjct: 497 NDGYIVDSLGWAHYRLGDFDQSVTELERAIELKAGDPTINDHLGDAYWRVG 547



 Score = 40.8 bits (94), Expect = 4e-08
 Identities = 22/84 (26%), Positives = 49/84 (58%), Gaps = 2/84 (2%)

Query: 24  NLEKSQEMAEIGFAYI--GIDNDKAIEYYEKAIKLNPDDANAISFLGTLYDGEGDREKAY 81
           N E+ Q +  +G++++  GI+ D+ ++   +A++L P+D   +  LG  +   GD +++ 
Sbjct: 460 NPEQPQVLNYLGYSWVDKGINLDEGMKMISRAVELRPNDGYIVDSLGWAHYRLGDFDQSV 519

Query: 82  EYLTKALEMEPKNPWMYYNLGLYY 105
             L +A+E++  +P +  +LG  Y
Sbjct: 520 TELERAIELKAGDPTINDHLGDAY 543



 Score = 28.9 bits (63), Expect = 2e-04
 Identities = 33/123 (26%), Positives = 46/123 (37%), Gaps = 10/123 (8%)

Query: 48  EYYEKAIKLNPDDANAI--------SFLGTLYDGEGDREKAYEYLTKALEMEPKNPWMYY 99
           E  EK  K      NA+        S  G L + EG  E    YL  +  ++PK+P    
Sbjct: 269 EAIEKGEKPEQQITNAVEGAASVMFSIAGAL-NREGAEEIVTLYLQTSRALDPKSPDTLI 327

Query: 100 NLG-LYYLNHDDNMAIGCFEKALRIDPENECCWSQLGYTYYDIGDYTNSKLNFEKAYEIN 158
            LG L         AI  + +  +  P +     QLG T    G    S+ +     E +
Sbjct: 328 LLGGLAEAMKQPERAITFYREVPKDSPMHRISELQLGLTLAQTGKVEESRKHLLSLLESD 387

Query: 159 PKD 161
           PKD
Sbjct: 388 PKD 390



 Score = 26.6 bits (57), Expect = 9e-04
 Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 18/149 (12%)

Query: 21  EQNNLEKSQEMAEIGFAYIGIDNDKAIE-----YYEKAIKLNPDDANAISFLGTLYDGEG 75
           EQ      +  A + F+  G  N +  E     Y + +  L+P   + +  LG L +   
Sbjct: 278 EQQITNAVEGAASVMFSIAGALNREGAEEIVTLYLQTSRALDPKSPDTLILLGGLAEAMK 337

Query: 76  DREKAYEYLTKALEMEPKNPWMYYNLGLYYLNHDDNMAIGCFEKA-------LRIDPENE 128
             E+A  +  +  +  P +      LGL           G  E++       L  DP++ 
Sbjct: 338 QPERAITFYREVPKDSPMHRISELQLGLTLAQ------TGKVEESRKHLLSLLESDPKDI 391

Query: 129 CCWSQLGYTYYDIGDYTNSKLNFEKAYEI 157
             +   G    D  DY     N++KA E+
Sbjct: 392 RSYLAYGSVLSDAKDYKAMAENYDKAVEV 420